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Uncovering The Unique Functions And Regulation Of The Palmitoylated Calcineurin Isoform, CNβ1

2020· article· en· W3017249132 on OpenAlexaff
Idil Ulengin-Talkish, Rachel Bond, Nicole St‐Denis, Anne‐Claude Gingras, Alexis Z.L. Shih, Elizabeth Conibear, Tamás Balla, Péter Várnai, Martha Cyert

Bibliographic record

VenueThe FASEB Journal · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicSignaling Pathways in Disease
Canadian institutionsUniversity of British ColumbiaLunenfeld-Tanenbaum Research Institute
Fundersnot available
KeywordsPalmitoylationNFATGene isoformPhosphataseCell biologyProtein subunitBiochemistryIsozymeChemistryCalcineurinPhosphorylationFlippaseCysteineBiologyEnzymeTranscription factorGeneMembrane

Abstract

fetched live from OpenAlex

Calcineurin (CN), the serine/threonine protein phosphatase and the target of immunosuppressants FK506 and CysA, is a key regulator of Ca 2+ signaling with critical roles in the immune, cardiovascular and nervous systems. CN is a heterodimer of regulatory and catalytic subunits whose functions and regulation by Ca 2+ and calmodulin are well understood for canonical CN isozymes (CNalpha, CNβ2). In contrast, the CN β 1 isozyme, contains a catalytic subunit with a non‐canonical C‐terminus generated by alternative 3’ pre‐mRNA processing. The few studies of CNβ1, conserved in eukaryotes and broadly expressed in human tissues, demonstrate its unique physiological functions. For example, overexpression of the CNβ2 promotes cardiac hypertrophy through activation of NFAT, whereas CNβ1 is cardioprotective and does not dephosphorylate NFAT. However, CNβ1 specific substrates remain unknown. We determined that the unique C‐tail confers distinct regulatory properties , intracellular localization and function to CN β 1 . In vitro, CNβ1 displays distinct enzymatic properties. Instead of the auto‐inhibitory domain that blocks the active site of canonical CN isoforms under non‐signaling conditions, CNβ1 is autoinhibited by a sequence motif at its C` tail that blocks substrate binding. We show that CNβ1 localizes to the plasma membrane (PM), Golgi, and intracellular vesicles, in contrast to the cytosolic CNβ2, due to the palmitoylation of two conserved cysteine residues unique to its C‐tail. Palmitoylation allows CNβ1 to access substrates that are distinct from canonical CN isoforms. CNβ1 preferentially interacts with membrane proteins, and all members of a highly conserved PI4‐kinase complex, PI4KIIIA, TTC7B, FAM126A and EFR3B, were identified as CNβ1‐specific interactors by AP‐MS. This complex recruits the cytosolic PI4KIIIA to the PM where it synthesizes phosphatidylinositol‐4‐phosphate (PI4P), a precursor of the critical signaling phospholipid, PI(4,5)P 2 , required for sustained Ca 2+ signaling through GPCRs. We identify a CN binding motif in FAM126A, mutation of which results in FAM126A hyperphosphorylation, and prevents association of CNβ1 with the PI4KIIIA complex. Using BRET‐based detection of phosphoinositides in live cells, we show that CN promotes PI4P synthesis at the PM during signaling through the muscarinic receptor, and hypothesize that CNβ1 mediates this regulation by dephosphorylating FAM126A at the PM. Using pulse‐chase analysis in cells metabolically labelled with a palmitate analog, we demonstrate that palmitoylation of CNβ1 is dynamic and turns over rapidly. We are currently investigating whether dynamic palmitoylation regulates localization and activity CNβ1 activity in vivo during signaling. Together, these studies provide the first mechanistic understanding of CNβ1 and not only uncovers a novel Ca 2+ ‐dependent mechanism for activation of PI4P synthesis at the PM during signaling but also suggests palmitoylation as a novel mechanism that confers spatio/temporal regulation of calcineurin signaling in cells. Support or Funding Information NIGMS

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.011
Threshold uncertainty score0.185

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.222
Teacher spread0.208 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2020
Admission routes1
Has abstractyes

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