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Record W3017663683 · doi:10.1007/s10654-020-00633-4

The Dementias Platform UK (DPUK) Data Portal

2020· article· en· W3017663683 on OpenAlexaff
Sarah Bauermeister, Chris Orton, Simon Thompson, Roger A. Barker, Joshua Bauermeister, Yoav Ben‐Shlomo, Carol Brayne, David J. Burn, Archie Campbell, Catherine M. Calvin, Siddharthan Chandran, Nish Chaturvedi, Geneviève Chêne, Iain P. Chessell, Anne Corbett, Daniel Davis, Mike Denis, Carole Dufouil, Paul Elliott, Nick C. Fox, David Hill, Scott M. Hofer, Christoph Jindra, Frank Kee, Chi-Hun Kim, Changsoo Kim, Mika Kivimäki, Ivan Koychev, Rachael A. Lawson, Gerard J. Linden, Ronan A Lyons, Clare E. Mackay, Paul M. Matthews, Bernadette McGuiness, Lefkos Middleton, Catherine Moody, Katrina Moore, Duk L. Na, John T. O’Brien, Sébastien Ourselin, Shantini Paranjothy, Ki‐Soo Park, David J. Porteous, Marcus Richards, Craig Ritchie, Jonathan D. Rohrer, Martin N. Rossor, James B. Rowe, Rachael I. Scahill, Christian Schnier, Jonathan M. Schott, Sang Won Seo, Matthew South, Matthew Steptoe, Sarah J. Tabrizi, Andrea Tales, Therese Tillin, Nicholas J. Timpson, Arthur W. Toga, Pieter Jelle Visser, Richard Wade‐Martins, Tim Wilkinson, Julie Williams, Andrew Wong, John Gallacher

Bibliographic record

VenueEuropean Journal of Epidemiology · 2020
Typearticle
Languageen
FieldEnvironmental Science
TopicHealth, Environment, Cognitive Aging
Canadian institutionsUniversity of Victoria
FundersEconomic and Social Research CouncilMedical Research CouncilDementias Platform UKRosetrees TrustParkinson's UKEngineering and Physical Sciences Research CouncilNational Institute for Health and Care ResearchUK Research and InnovationWellcome Trust
KeywordsMedicineEpidemiologyPublic healthInternal medicinePathology

Abstract

fetched live from OpenAlex

The Dementias Platform UK Data Portal is a data repository facilitating access to data for 3 370 929 individuals in 42 cohorts. The Data Portal is an end-to-end data management solution providing a secure, fully auditable, remote access environment for the analysis of cohort data. All projects utilising the data are by default collaborations with the cohort research teams generating the data. The Data Portal uses UK Secure eResearch Platform infrastructure to provide three core utilities: data discovery, access, and analysis. These are delivered using a 7 layered architecture comprising: data ingestion, data curation, platform interoperability, data discovery, access brokerage, data analysis and knowledge preservation. Automated, streamlined, and standardised procedures reduce the administrative burden for all stakeholders, particularly for requests involving multiple independent datasets, where a single request may be forwarded to multiple data controllers. Researchers are provided with their own secure 'lab' using VMware which is accessed using two factor authentication. Over the last 2 years, 160 project proposals involving 579 individual cohort data access requests were received. These were received from 268 applicants spanning 72 institutions (56 academic, 13 commercial, 3 government) in 16 countries with 84 requests involving multiple cohorts. Projects are varied including multi-modal, machine learning, and Mendelian randomisation analyses. Data access is usually free at point of use although a small number of cohorts require a data access fee.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.023
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.101
Threshold uncertainty score0.337

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0060.023
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0040.005
Science and technology studies0.0010.001
Scholarly communication0.0040.005
Open science0.0020.008
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.1010.048

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.169
GPT teacher head0.330
Teacher spread0.161 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations71
Published2020
Admission routes1
Has abstractyes

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