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Record W3023826944 · doi:10.1109/tmi.2020.2992108

Class-Agnostic Weighted Normalization of Staining in Histopathology Images Using a Spatially Constrained Mixture Model

2020· article· en· W3023826944 on OpenAlexafffund
Sobhan Shafiei, Amir Safarpoor, Ahad Jamalizadeh, Hamid R. Tizhoosh

Bibliographic record

VenueIEEE Transactions on Medical Imaging · 2020
Typearticle
Languageen
FieldComputer Science
TopicAI in cancer detection
Canadian institutionsUniversity of Waterloo
FundersNatural Sciences and Engineering Research Council of CanadaGovernment of Ontario
KeywordsNormalization (sociology)Artificial intelligenceComputer sciencePattern recognition (psychology)StainComputer visionCluster analysisPathologyStaining

Abstract

fetched live from OpenAlex

The colorless biopsied tissue samples are usually stained in order to visualize different microscopic structures for diagnostic purposes. But color variations associated with the process of sample preparation, usage of raw materials, diverse staining protocols, and using different slide scanners may adversely influence both visual inspection and computer-aided image analysis. As a result, many methods are proposed for histopathology image stain normalization in recent years. In this study, we introduce a novel approach for stain normalization based on learning a mixture of multivariate skew-normal distributions for stain clustering and parameter estimation alongside a stain transformation technique. The proposed method, labeled "Class-Agnostic Weighted Normalization" (short CLAW normalization), has the ability to normalize a source image by learning the color distribution of both source and target images within an expectation-maximization framework. The novelty of this approach is its flexibility to quantify the underlying both symmetric and nonsymmetric distributions of the different stain components while it is considering the spatial information. The performance of this new stain normalization scheme is tested on several publicly available digital pathology datasets to compare it against state-of-the-art normalization algorithms in terms of ability to preserve the image structure and information. All in all, our proposed method performed superior more consistently in comparison with existing methods in terms of information preservation, visual quality enhancement, and boosting computer-aided diagnosis algorithm performance.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.933
Threshold uncertainty score0.708

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.265
Teacher spread0.247 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations24
Published2020
Admission routes2
Has abstractyes

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