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Record W3026685296 · doi:10.17863/cam.51245

Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.

2020· article· en· W3026685296 on OpenAlexfundno aff
Xiang Shu, Jirong Long, Qiuyin Cai, Sun‐Seog Kweon, Ji-Yeob Choi, Michiaki Kubo, Sue K. Park, Manjeet K. Bolla, Joe Dennis, Qin Wang, Yaohua Yang, Jiajun Shi, Xingyi Guo, Bingshan Li, Ran Tao, Kristan J. Aronson, Kelvin Y.K. Chan, Tsun Leung Chan, Yu‐Tang Gao, Mikael Hartman, Weang-Kee Ho, Hidemi Ito, Motoki Iwasaki, Hiroji Iwata, Esther M. John, Yoshio Kasuga, US Khoo, Sun‐Young Kong, Allison W. Kurian, Ava Kwong, Jingmei Li, Artitaya Lophatananon, Siew‐Kee Low, Shivaani Mariapun, Koichi Matsuda, Keitaro Matsuo, Kenneth Muir, Dong‐Young Noh, Boyoung Park, Chen‐Yang Shen, Min‐Ho Shin, John J. Spinelli, Atsushi Takahashi, Chiu-Chen Tseng, Shoichiro Tsugane, Anna H. Wu, Yong‐Bing Xiang, Taiki Yamaji, Ying Zheng, Roger L. Milne, Alison M. Dunning, Paul D.P. Pharoah, Montserrat García‐Closas, Soo‐Hwang Teo, Xiao‐Ou Shu, Daehee Kang, Douglas F. Easton, Jacques Simard, Wei Zheng

Bibliographic record

VenueApollo (University of Cambridge) · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicNutrition, Genetics, and Disease
Canadian institutionsnot available
FundersNational Cancer InstituteBiomedical Research CouncilNational Medical Research CouncilCanadian Institutes of Health ResearchNational Institutes of HealthGovernment of CanadaChonnam National University Hwasun HospitalMinisterio de Economía y CompetitividadVanderbilt-Ingram Cancer CenterChonnam National UniversityCalifornia Breast Cancer Research ProgramMinistry of Education, Culture, Sports, Science and TechnologyTaiwan BiobankNational Research FoundationAcademia SinicaMinistry of Education, Science and TechnologyNational Institute for Health and Care ResearchYayasan Sime DarbyManchester Biomedical Research CentreFondation du cancer du sein du QuébecJapan Agency for Medical Research and DevelopmentInstitute of Biomedical Sciences, Academia SinicaGenome CanadaU.S. Department of DefenseCancer Research UKNational Research Foundation of KoreaVanderbilt University
KeywordsBreast cancerGenome-wide association studyGenetic associationHeritabilityGeneticsMeta-analysisMissing heritability problemBiologyEtiologyCase-control studyIdentification (biology)OncologyCancerMedicineDemographyGenetic variantsInternal medicineSingle-nucleotide polymorphismGeneGenotype

Abstract

fetched live from OpenAlex

Known risk variants explain only a small proportion of breast cancer heritability, particularly in Asian women. To search for additional genetic susceptibility loci for breast cancer, here we perform a meta-analysis of data from genome-wide association studies (GWAS) conducted in Asians (24,206 cases and 24,775 controls) and European descendants (122,977 cases and 105,974 controls). We identified 31 potential novel loci with the lead variant showing an association with breast cancer risk at P

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.010
metaresearch head score (Gemma)0.014
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Meta-analysis · Consensus signal: Meta-analysis
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score0.054

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0100.014
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0030.017
Bibliometrics0.0040.005
Science and technology studies0.0010.000
Scholarly communication0.0030.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.053
GPT teacher head0.272
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designMeta-analysis
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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