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MAFODKM: Mobile Application Framework for the management of Omics Data and Knowledge Mining

2020· article· en· W3039541502 on OpenAlexaff
Olugbenga Oluwagbemi, Adewumi, Sanjay Misra, Marcelo León

Bibliographic record

VenueJournal of Physics Conference Series · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolomics and Mass Spectrometry Studies
Canadian institutionsAlgonquin College
Fundersnot available
KeywordsOmicsInfectious disease (medical specialty)Lassa feverComputer scienceJavaScriptData managementMalariaData scienceWorld Wide WebDiseaseData miningMedicineBioinformaticsBiology

Abstract

fetched live from OpenAlex

Abstract There are many infectious diseases still plaguing different nations of the world. Some of these infectious diseases such as HIV, malaria, Ebola, and Lassa fever tend to affect less developed nations including those in Africa. In order to combat these diseases, there is need for ready access to omics data as the knowledge gained from this data can be used to combat infectious diseases globally. This study proposes a Mobile Application Framework for the management of Omics Data and Knowledge Mining (MAFODKM). The proposed framework was designed using a layered architecture. A prototype client application was implemented using JavaScript. In order to make it cross-platform, Apache Cordova framework was leveraged. The proposed framework will among other benefits provide an integrated platform for researchers to collaborate and conduct omics-related research to fight infectious diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.833
Threshold uncertainty score0.208

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.043
GPT teacher head0.308
Teacher spread0.265 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2020
Admission routes1
Has abstractyes

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