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Record W3041319720 · doi:10.1101/2020.07.09.20137240

The impact of the variation of imaging factors on the robustness of Computed Tomography Radiomic Features: A review

2020· review· en· W3041319720 on OpenAlexaff
Reza Reiazi, Engy Abbas, Petra Famiyeh, Aria Rezaie, Jennifer Kwan, Tirth Patel, Scott V. Bratman, Tony Tadic, Fei‐Fei Liu, Benjamin Haibe‐Kains

Bibliographic record

VenuemedRxiv · 2020
Typereview
Languageen
FieldMedicine
TopicRadiomics and Machine Learning in Medical Imaging
Canadian institutionsVector InstitutePrincess Margaret Cancer CentreOntario Institute for Cancer ResearchUniversity of TorontoUniversity Health Network
Fundersnot available
KeywordsRobustness (evolution)RadiomicsComputer scienceComputed tomographyScannerData miningArtificial intelligenceHistogramMedical imagingPattern recognition (psychology)Medical physicsMedicineRadiologyImage (mathematics)

Abstract

fetched live from OpenAlex

ABSTRACT The field of radiomics is at the forefront of personalized medicine. However, there are concerns regarding the robustness of its features against multiple medical imaging parameters and the performance of the predictive models built upon them. Therefore, our review aims to identify image perturbation factors (IPF) that most influence the robustness of radiomic features in biomedical research. We also provide insights into the validity and discrepancy of different methodologies applied to investigate the robustness of radiomic features. We selected 527 papers based on the primary criterion that the papers had imaging parameters that affected the reproducibility of radiomic features extracted from computed tomography (CT) images. We compared the reported performance of these parameters along with IPF in the eligible studies. We then proceeded to divide our studies into three groups based on the type of their IPF: ( i ) scanner parameters, ( ii ) acquisition parameters and ( iii ) reconstruction parameters. Our review highlighted that the reconstruction algorithm was the most reproducible factor and shape along with intensity histogram (IH) were the most robust radiomic features against variation in imaging parameters. This review identified substantial inconsistencies related to the methodology and the reporting style of the reviewed studies such as type of study performed, the metrics used for robustness, the feature extraction techniques, the image perturbation factors, the reporting style and their outcome inclusion. Finally, we hope the IPFs and the methodology inconsistencies identified will aid the scientific community in conducting research in a way that is more reproducible and avoids the pitfalls of previous analyses.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.850
Threshold uncertainty score0.558

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.328
Teacher spread0.306 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designOther design
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2020
Admission routes1
Has abstractyes

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