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First record of <i>Septoria rudbeckiae</i> on <i>Rudbeckia</i> in the United Kingdom

2020· article· en· W3044962570 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueNew Disease Reports · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsnot available
Fundersnot available
KeywordsPycnidiumBiologySpotsBotanyConidiumPotato dextrose agarSeptoriaLeaf spotWiltingHorticultureBlack spotAgar

Abstract

fetched live from OpenAlex

Species of Rudbeckia, often known as black-eyed Susan or coneflower, are used as bedding plants in UK gardens. The large, daisy-like flowerheads typically have bright yellow petals and a conspicuous black centre which may be raised into a cone shape. During the summer of 2016, Rudbeckia fulgida var. sullivantii cv. Goldsturm plants, purchased in the preceding May from a nursery in south-east England, were observed with black leaf spots in outdoor beds at the Royal Horticultural Society (RHS) Garden Wisley. Lower leaves exhibited small black lesions in July, which coalesced as the season progressed leading to complete necrosis of the bottom leaves and spotting on higher leaves. Spots showed no halos and became necrotic only later in the season. Flowering did not appear to be reduced. Pycnidia within the leaf spots were epiphyllous, 50-75 μm diameter, with a neck protruding slightly above the leaf surface. Conidia were filiform, 30-60 times 1.5-2 μm, with three septa. A single-spore isolate was obtained on water agar and cultured on potato dextrose agar. Living cultures were deposited in the RHS culture collection held at RHS Garden Wisley (Accession No. RHS454672) and at Westerdijk Fungal Biodiversity Institute, Netherlands (Accession No. CBS145765). The internal transcribed spacer (ITS) region of rDNA, the β-tubulin (Btub) gene and the translation elongation factor 1-alpha (EF1) gene were amplified using the primers ITS4:ITS5, T1:B-Sandy-R, and EF1-728F:EF2, respectively, according to the method by Verkley et al. (5). The DNA amplicons were sequenced (GenBank Accession Nos. MN093336 (ITS), MN105980 (Btub) and MN166626 (EF1)). The ITS sequence differed by one base pair from the only ITS sequence available for Septoria rudbeckiae (JQ677043). No previous sequences were available for comparison for Btub and EF1 and none of the available sequences had more than 90% identity. Pathogenicity was confirmed by spraying Rudbeckia fulgida sullivantii ‘Goldsturm’ plants with a conidial suspension (1 × 106 conidia/ml) prepared from spores from 21-day-old cultures on potato dextrose agar, incubated at 20°C with a 12 hr light/ 12 hr dark cycle. Plants were kept in high humidity for 72 hr after inoculation. After four weeks, black lesions were observed on leaves. Pycnidia and conidia consistent with S. rudbeckiae were found within each lesion. Control plants sprayed with sterilised water showed no symptoms. Septoria rudbeckiae was described from the USA (Ellis & Halsted, 1) where it is now widespread causing disfigurement of Rudbeckia in gardens. Although the fungus has been recorded from a number of different Rudbeckia species, Rudbeckia fulgida var. sullivanti cv. Goldstrum has been recognised in the USA as one of the most susceptible cultivars. Septoria rudbeckiae has also been reported from Canada, Bulgaria and Romania (Farr & Rossman, 2), Turkey (as Septoria sp.; Gumrukcu, 3) and Korea (Park, 4). To our knowledge, this is the first report of S. rudbeckiae in the United Kingdom. The authors would like to thank Jane Renshaw for aid in preparation of fungal cultures.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.606
Threshold uncertainty score0.544

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.246
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it