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Record W3049208831 · doi:10.1158/0008-5472.can-20-0168

Intake of Dietary Fruit, Vegetables, and Fiber and Risk of Colorectal Cancer According to Molecular Subtypes: A Pooled Analysis of 9 Studies

2020· article· en· W3049208831 on OpenAlexafffund
Akihisa Hidaka, Tabitha A. Harrison, Yin Cao, Lori C. Sakoda, Richard Barfield, Marios Giannakis, Mingyang Song, Amanda I. Phipps, Jane C. Figueiredo, Syed Hassan Ejaz Zaidi, Amanda E. Toland, Efrat L. Amitay, Sonja I. Berndt, Ivan Borozan, Andrew T. Chan, Steven Gallinger, Marc J. Gunter, Mark A. Guinter, Sophia Harlid, Heather Hampel, Mark A. Jenkins, Yi Lin, Vı́ctor Moreno, Polly A. Newcomb, Reiko Nishihara, Shuji Ogino, Mireia Obón‐Santacana, Patrick S. Parfrey, John D. Potter, Martha L. Slattery, Robert S. Steinfelder, Caroline Y. Um, Xiaoliang Wang, Michael O. Woods, Bethany Van Guelpen, Stephen N. Thibodeau, Michael Hoffmeister, Wei Sun, Li Hsu, Daniel D. Buchanan, Peter T. Campbell, Ulrike Peters

Bibliographic record

VenueCancer Research · 2020
Typearticle
Languageen
FieldMedicine
TopicGenetic factors in colorectal cancer
Canadian institutionsMemorial University of NewfoundlandLunenfeld-Tanenbaum Research InstituteOntario Institute for Cancer Research
FundersCity of SeattleNational Cancer InstituteNational Heart, Lung, and Blood InstituteNIH Clinical CenterHealth and Medical Research FundAustralian Institute of Health and Welfare, Australian GovernmentWorld Cancer Research FundCancerfondenCanadian Institutes of Health ResearchMutuelle Générale de l'Education NationaleInstitut Gustave-RoussyCancer Council VictoriaDeutsche KrebshilfeNordForskVetenskapsrådetKræftens BekæmpelseSvenska Forskningsrådet FormasWorld Health OrganizationUehara Memorial FoundationSeattle Children’s HospitalVästerbotten Läns LandstingLigue Contre le CancerDeutsches KrebsforschungszentrumInstitut National de la Santé et de la Recherche MédicaleBundesministerium für Bildung und ForschungCentre International de Recherche sur le CancerMayo ClinicNational Institutes of HealthU.S. Department of Health and Human Services
KeywordsColorectal cancerKRASInternal medicineMicrosatellite instabilityMedicineOncologyCancerConfidence intervalBiologyGeneticsAlleleMicrosatelliteGene

Abstract

fetched live from OpenAlex

Abstract Protective associations of fruits, vegetables, and fiber intake with colorectal cancer risk have been shown in many, but not all epidemiologic studies. One possible reason for study heterogeneity is that dietary factors may have distinct effects by colorectal cancer molecular subtypes. Here, we investigate the association of fruit, vegetables, and fiber intake with four well-established colorectal cancer molecular subtypes separately and in combination. Nine observational studies including 9,592 cases with molecular subtypes for microsatellite instability (MSI), CpG island methylator phenotype (CIMP), and somatic mutations in BRAF and KRAS genes, and 7,869 controls were analyzed. Both case-only logistic regression analyses and polytomous logistic regression analyses (with one control set and multiple case groups) were used. Higher fruit intake was associated with a trend toward decreased risk of BRAF-mutated tumors [OR 4th vs. 1st quartile = 0.82 (95% confidence interval, 0.65–1.04)] but not BRAF-wildtype tumors [1.09 (0.97–1.22); P difference as shown in case-only analysis = 0.02]. This difference was observed in case–control studies and not in cohort studies. Compared with controls, higher fiber intake showed negative association with colorectal cancer risk for cases with microsatellite stable/MSI-low, CIMP-negative, BRAF-wildtype, and KRAS-wildtype tumors (Ptrend range from 0.03 to 3.4e-03), which is consistent with the traditional adenoma-colorectal cancer pathway. These negative associations were stronger compared with MSI-high, CIMP-positive, BRAF-mutated, or KRAS-mutated tumors, but the differences were not statistically significant. These inverse associations for fruit and fiber intake may explain, in part, inconsistent findings between fruit or fiber intake and colorectal cancer risk that have previously been reported. Significance: These analyses by colorectal cancer molecular subtypes potentially explain the inconsistent findings between dietary fruit or fiber intake and overall colorectal cancer risk that have previously been reported.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.075
Threshold uncertainty score0.509

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.002
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.093
GPT teacher head0.411
Teacher spread0.318 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations48
Published2020
Admission routes2
Has abstractyes

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