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Record W3083147942 · doi:10.21105/joss.02431

pyomeca: An Open-Source Framework for Biomechanical Analysis

2020· article· en· W3083147942 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueThe Journal of Open Source Software · 2020
Typearticle
Languageen
FieldEngineering
TopicMechanics and Biomechanics Studies
Canadian institutionsUniversité de Montréal
Fundersnot available
KeywordsOpen sourceComputer sciencePhysical medicine and rehabilitationMedicineProgramming language

Abstract

fetched live from OpenAlex

Biomechanics is defined as the study of the structure and function of biological systems by means of the methods of mechanics While musculoskeletal biomechanics branches into several subfields, the data used are remarkably similar. The processing, analysis and visualization of these data could therefore be unified in a software package. Most biomechanical data characterizing human and animal movement appear as temporal waveforms representing specific measures such as muscle activity or joint angles. These data are typically multidimensional arrays structured around labels with arbitrary metadata (Figure Existing software solutions share some limitations. Some of them are proprietary (Damsgaard, Rasmussen, Christensen, Surma, & Zee, 2006) or based on closed-source programming language (Dixon, Loh, Michaud-Paquette, & Pearsall, 2017; Muller, Pontonnier, Puchaud, & Dumont, 2019). Others do not leverage labels and metadata pyomeca is a Python package designed to address these limitations. It provides basic operations useful in the daily workflow of a biomechanical researcher such as reading, writing, filtering and plotting, but also more advanced biomechanical routines geared towards rigid body mechanics and signal processing. By offering a single, efficient and flexible implementation, pyomeca standardizes these procedures, freeing up valuable research time, thereby allowing researchers to focus on the scientific research questions at hand.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.878
Threshold uncertainty score0.787

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0040.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.054
GPT teacher head0.305
Teacher spread0.252 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it