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Record W3088363315

Maintenance and disruption of intestinal epithelial homeostasis

2020· article· en· W3088363315 on OpenAlexfundno aff
Bartolomeus J. Meijer

Bibliographic record

VenueUvA-DARE (University of Amsterdam) · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEndoplasmic Reticulum Stress and Disease
Canadian institutionsnot available
FundersNederlandse Organisatie voor Wetenschappelijk OnderzoekVrije Universiteit AmsterdamUniversity of Alberta
KeywordsColorectal cancerCell biologyTranscription factorContext (archaeology)BiologyMouse model of colorectal and intestinal cancerIn vivoCancer researchIn vitroCancerGeneticsGene
DOInot available

Abstract

fetched live from OpenAlex

In this thesis the role of ER stress on the intestinal epithelial stem cell state in the context of colorectal cancer has been explored using different in vivo and in vitro genetically modified experimental models. Inactivation of APC is an early and key event in the development of colorectal cancer. This has attracted researchers to develop drugs that target molecules specific to APC-mutated cells. One of the main findings presented in this thesis is that ER stress reduces adenoma formation in the Apc-mutated mouse intestine. In addition, a deeper understanding of the underlying mechanism responsible for ER stress-induced loss of stemness is provided by identifying transcription factors altered upon ER stress. Furthermore, our ATF2 and ATF7 experiments demonstrate an uncoupling role of the ATF proteins in health and disease, a concept that provides key opportunities for the development of targeted therapies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.199
Teacher spread0.190 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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