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Record W3091077232 · doi:10.5194/biofilms9-136

Comparative assessment of biofilm sampling methods on stainless steel surfaces in a CDC biofilm reactor

2020· article· en· W3091077232 on OpenAlexaff
Nissa Niboucha, Coralie Goetz, Julie Jean

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBacterial biofilms and quorum sensing
Canadian institutionsUniversité Laval
Fundersnot available
KeywordsBiofilmSonicationPseudomonas fluorescensChemistryMatrix (chemical analysis)ChromatographyMicrobiologyMaterials scienceBacteriaBiology

Abstract

fetched live from OpenAlex

The presence of biofilms on stainless steel surfaces in the dairy industry greatly limits the efficiency of the cleaning procedures. The matrix of extracellular polymeric substances produced by the embedded bacteria is largely responsible for this irreversible binding. Therefore, to detach the biofilm in its entirety from the surface for microbiological identification and physico-chemical characterization is limited with the classical methods commonly used for surface sampling such as swabbing. The objective of this study is to optimize an extraction technique of biofilm formed using a dynamic CDC bioreactor system by a strain of Pseudomonas fluorescens isolated from the dairy industry during a biofilm issue. Three methods: swabbing, scraping and sonic brushing were tested in order to determine which one of these techniques allows a better recovery of the biofilm. They were also compared to sonication which is the standard method established by ASTM International. The results demonstrated that the total viable counts obtained by scraping (8.65 ± 0.07 CFU/cm2) were not significantly different from those achieved by sonication (8.74 ± 0.06 CFU/cm2) in contrast to the other two approaches, while scanning electron microscopy showed an effective removal of biofilms from surfaces by sonic brushing. In conclusion, other combinations including brushing, sonication and/or scraping must be investigated for representative sampling of biofilm on the surfaces of dairy plants.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.077
GPT teacher head0.384
Teacher spread0.307 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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