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Fungal Systematics and Evolution : FUSE 6

2020· article· en· W3093794066 on OpenAlexaboutno aff
Danny Haelewaters, Bálint Dima, Abbas I.I. Abdel-Hafiz, Mohamed A. Abdel‐Wahab, Samar R. Abul-Ezz, İsmail Acar, Elvira Aguirre-Acosta, M. Catherine Aime, Suheda Aldemir, Muhammad Ali, Olivia Ayala‐Vásquez, Mahmoud S. Bakhit, Hira Bashir, Eliseo Battistin, Egil Bendiksen, Rigoberto Castro‐Rivera, Ömer Çolak, André De Kesel, Javier Isaac de la Fuente, Ayten Dizkırıcı, Shah Hussain, Gerrit Maarten Jansen, Oğuzhan Kaygusuz, Abdul Nasir Khalid, Junaid Khan, Anna A. Kiyashko, Ellen Larsson, César Ramiro Martínez-González, Olga Morozova, Abdul Rehman Niazi, Machiel E. Noordeloos, Thị Hà Giang Phạm, Е. С. Попов, Nadezhda V. Psurtseva, Nathan Schoutteten, Hassan Sher, İbrahim Türkekul, Annemieke Verbeken, Habib Ahmad, Najam‐ul‐Sehar Afshan, Philippe Christe, Muhammad Fiaz, Olivier Glaizot, Jingyu Liu, Javeria Majeed, Wanda Markotter, Angelina Nagy, Haq Nawaz, Viktor Papp, Áron Péter, Walter P. Pfliegler, Tayyaba Qasim, Maria Riaz, Attila D. Sándor, Tamara Szentiványi, Hermann Voglmayr, Nousheen Yousaf, Irmgard Krisai‐Greilhüber

Bibliographic record

VenueSERVAL (Université de Lausanne) · 2020
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicMycorrhizal Fungi and Plant Interactions
Canadian institutionsnot available
Fundersnot available
KeywordsBiologySystematicsBotanyGenusTaxonomy (biology)Zoology

Abstract

fetched live from OpenAlex

Fungal Systematics and Evolution (FUSE) is one of the journal series to address the "fusion" between morphological data and molecular phylogenetic data and to describe new fungal taxa and interesting observations. This paper is the 6th contribution in the FUSE series-presenting one new genus, twelve new species, twelve new country records, and three new combinations. The new genus is: Pseudozeugandromyces (Laboulbeniomycetes, Laboulbeniales). The new species are: Albatrellopsis flettioides from Pakistan, Aureoboletus garciae from Mexico, Entoloma canadense from Canada, E. frigidum from Sweden, E. porphyroleucum from Vietnam, Erythrophylloporus flammans from Vietnam, Marasmiellus boreoorientalis from Kamchatka Peninsula in the Russian Far East, Marasmiellus longistipes from Pakistan, Pseudozeugandromyces tachypori on Tachyporus pusillus (Coleoptera, Staphylinidae) from Belgium, Robillarda sohagensis from Egypt, Trechispora hondurensis from Honduras, and Tricholoma kenanii from Turkey. The new records are: Arthrorhynchus eucampsipodae on Eucampsipoda africanum (Diptera, Nycteribiidae) from Rwanda and South Africa, and on Nycteribia vexata (Diptera, Nycteribiidae) from Bulgaria; A. nycteribiae on Eucampsipoda africanum from South Africa, on Penicillidia conspicua (Diptera, Nycteribiidae) from Bulgaria (the first undoubtful country record), and on Penicillidia pachymela from Tanzania; Calvatia lilacina from Pakistan; Entoloma shangdongense from Pakistan; Erysiphe quercicola on Ziziphus jujuba (Rosales, Rhamnaceae) and E. urticae on Urtica dioica (Rosales, Urticaceae) from Pakistan; Fanniomyces ceratophorus on Fannia canicularis (Diptera, Faniidae) from the Netherlands; Marasmiellus biformis and M. subnudus from Pakistan; Morchella anatolica from Turkey; Ophiocordyceps ditmarii on Vespula vulgaris (Hymenoptera, Vespidae) from Austria; and Parvacoccum pini on Pinus cembra (Pinales, Pinaceae) from Austria. The new combinations are: Appendiculina gregaria, A. scaptomyzae, and Marasmiellus rodhallii. Analysis of an LSU dataset of Arthrorhynchus including isolates of A. eucampsipodae from Eucampsipoda africanum and Nycteribia spp. hosts, revealed that this taxon is a complex of multiple species segregated by host genus. Analysis of an SSU-LSU dataset of Laboulbeniomycetes sequences revealed support for the recognition of four monophyletic genera within Stigmatomyces sensu lato: Appendiculina, Fanniomyces, Gloeandromyces, and Stigmatomyces sensu stricto. Finally, phylogenetic analyses of Rhytismataceae based on ITS-LSU ribosomal DNA resulted in a close relationship of Parvacoccum pini with Coccomyces strobi.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.005
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0040.004
Science and technology studies0.0010.001
Scholarly communication0.0020.002
Open science0.0000.002
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0050.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.158
Teacher spread0.147 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations27
Published2020
Admission routes1
Has abstractyes

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