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Record W3095040956 · doi:10.1126/science.aba9572

Origins and genetic legacy of prehistoric dogs

2020· article· en· W3095040956 on OpenAlexafffund
Anders Bergström, Laurent Frantz, Ryan Schmidt, Erik Ersmark, Ophélie Lebrasseur, Linus Girdland-Flink, Audrey T. Lin, Jan Storå, Karl-Göran Sjögren, David W. Anthony, Ekaterina Antipina, Sarieh Amiri, Guy Bar‐Oz, Vladimir I. Bazaliiskii, Jelena Bulatović, Dorcas Brown, Alberto Carmagnini, Tom Davy, Sergey Fedorov, Ivana Fiore, Deirdre N. Fulton, Mietje Germonpré, James Haile, Evan K. Irving-Pease, Alexandra Jamieson, Luc Janssens, Irina Kirillova, Liora Kolska Horwitz, Julka Kuzmanovic-Cvetković, Yaroslav V. Kuzmin, Robert J. Losey, Daria Ložnjak Dizdar, Marjan Mashkour, Mario Novak, Vedat Onar, David Orton, Maja Pasarić, Miljana Radivojević, Dragana Rajković, Benjamin W. Roberts, Mikhail Sablin, Fedor K. Shidlovskiy, Ivana Stojanović, Antonio Tagliacozzo, Katerina Trantalidou, Inga Ullén, Aritza Villaluenga, Paula Wapnish, Keith Dobney, Anders Götherström, Anna Linderholm, Love Dalén, Ron Pinhasi, Greger Larson, Pontus Skoglund

Bibliographic record

VenueScience · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicHuman-Animal Interaction Studies
Canadian institutionsSimon Fraser UniversityUniversity of Alberta
FundersNatural Environment Research CouncilMedical Research CouncilUppsala Multidisciplinary Center for Advanced Computational ScienceSocial Sciences and Humanities Research Council of CanadaArts and Humanities Research CouncilEconomic and Social Research CouncilScience for Life LaboratoryUniversity of OxfordSmithsonian InstitutionFrancis Crick InstituteWellcome TrustSight Research UKCancer Research UK
KeywordsPrehistoryEvolutionary biologyBiologyArchaeologyGeography

Abstract

fetched live from OpenAlex

Dogs were the first domestic animal, but little is known about their population history and to what extent it was linked to humans. We sequenced 27 ancient dog genomes and found that all dogs share a common ancestry distinct from present-day wolves, with limited gene flow from wolves since domestication but substantial dog-to-wolf gene flow. By 11,000 years ago, at least five major ancestry lineages had diversified, demonstrating a deep genetic history of dogs during the Paleolithic. Coanalysis with human genomes reveals aspects of dog population history that mirror humans, including Levant-related ancestry in Africa and early agricultural Europe. Other aspects differ, including the impacts of steppe pastoralist expansions in West and East Eurasia and a near-complete turnover of Neolithic European dog ancestry.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.331
Teacher spread0.307 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations300
Published2020
Admission routes2
Has abstractyes

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