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Record W3096019909 · doi:10.1007/s11004-020-09898-7

MIN3P-HPC: A High-Performance Unstructured Grid Code for Subsurface Flow and Reactive Transport Simulation

2020· article· en· W3096019909 on OpenAlexafffund
Danyang Su, K. Ulrich Mayer, Kerry T. B. MacQuarrie

Bibliographic record

VenueMathematical Geosciences · 2020
Typearticle
Languageen
FieldEnvironmental Science
TopicGroundwater flow and contamination studies
Canadian institutionsUniversity of New BrunswickUniversity of British Columbia
FundersMitacsNuclear Waste Management Organization
KeywordsComputer scienceGridSupercomputerComputational scienceParallel computingDiscretizationDomain decomposition methodsUnstructured gridSoftwareThread (computing)Porous mediumBenchmark (surveying)Materials sciencePorosityFinite element methodPhysicsOperating system

Abstract

fetched live from OpenAlex

Abstract The numerical simulation of flow and reactive transport in porous media with complex domains is nontrivial. This paper presents a method to implement fully unstructured grid capabilities into the well-established software ParMIN3P-THCm, a process-based numerical model designed for the investigation of subsurface fluid flow and multicomponent reactive transport in variably saturated porous media with parallelization capability. The enhanced code, MIN3P-HPC, is modularized to support different cell types, spatial discretization methods and gradient reconstruction methods. MIN3P-HPC uses a vertex-centered control volume method with consideration of both vertex-based and cell-based material properties (e.g., permeability). A flexible parallelization scheme based on domain decomposition and thread acceleration was implemented, which allows the use of OpenMP, MPI and hybrid MPI-OpenMP, making optimized use of computer resources ranging from desktop PCs to distributed memory supercomputers. The code was verified by comparing the results obtained with the unstructured grid version to those produced by the structured grid version. Numerical accuracy was also verified against analytical solutions for 2D and 3D solute transport, and by comparison with third-party software using different cell types. Parallel efficiency of OpenMP, MPI and hybrid MPI-OpenMP versions was examined through a series of solute transport and reactive transport test cases. The results demonstrate the versatility and enhanced performance of MIN3P-HPC for reactive transport simulation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.006
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0020.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.233
Teacher spread0.213 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations37
Published2020
Admission routes2
Has abstractyes

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