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Record W3096461016 · doi:10.1111/geb.13346

sPlotOpen – An environmentally balanced, open‐access, global dataset of vegetation plots

2021· article· en· W3096461016 on OpenAlexaff
Francesco María Sabatini, Jonathan Lenoir, Tarek Hattab, Elise Arnst, Milan Chytrý, Jürgen Dengler, Patrice de Ruffray, S.M. Hennekens, Ute Jandt, Florian Jansen, Borja Jiménez‐Alfaro, Jens Kattge, Aurora Levesley, Valério D. Pillar, Oliver Purschke, Brody Sandel, Fahmida Sultana, Tsipe Aavik, Svetlana Aćić, Alicia Teresa Rosario Acosta, Emiliano Agrillo, Miguel Álvarez, Iva Apostolova, Mohammed Abu Sayed Arfin Khan, Luzmila Arroyo, Fabio Attorre, Isabelle Aubin, Arindam Banerjee, Marijn Bauters, Yves Bergeron, Erwin Bergmeier, Idoia Biurrun, Anne D. Bjorkman, Gianmaria Bonari, В. В. Бондарева, Jörg Brunet, Andraž Čarni, Laura Casella, Luis Cayuela, Tomáš Černý, Victor V. Chepinoga, János Csiky, Renata Ćušterevska, Els De Bie, André Luís de Gasper, Michele De Sanctis, Panayotis Dimopoulos, Jiří Doležal, Tetiana Dziuba, Mohamed A. El‐Sheikh, Brian J. Enquist, Jörg Ewald, Farideh Fazayeli, Richard Field, Manfred Finckh, Sophie Gachet, António Galán de Mera, Emmanuel Garbolino, Hamid Gholizadeh, Melisa A. Giorgis, В. Б. Голуб, Inger Greve Alsos, John‐Arvid Grytnes, Gregory R. Guerin, Álvaro G. Gutiérrez, Sylvia Haider, Mohamed Z. Hatim, Bruno Hérault, Guillermo Hinojos Mendoza, Norbert Hölzel, Jürgen Homeier, Wannes Hubau, Adrian Indreica, John Janssen, Birgit Jedrzejek, Anke Jentsch, Norbert Jürgens, Zygmunt Kącki, Jutta Kapfer, Dirk Nikolaus Karger, Ali Kavgacı, Elizabeth Kearsley, Michael Kessler, Larisa Khanina, Timothy J. Killeen, A. Yu. Korolyuk, Holger Kreft, Hjalmar S. Kühl, Анна Куземко, Flavia Landucci, Attila Lengyel, Frederic Lens, Débora Vanessa Lingner, Hongyan Liu, Tatiana Lysenko, Miguel D. Mahecha, Corrado Marcenò, В. Б. Мартыненко, Jesper Erenskjold Moeslund, Abel Monteagudo Mendoza, Ladislav Mucina, Jonas V. Müller, Jérôme Munzinger, Alireza Naqinezhad, Jalil Noroozi, Arkadiusz Nowak, Viktor Onyshchenko, Gerhard E. Overbeck, Meelis Pärtel, Aníbal Pauchard, Robert K. Peet, Josep Peñuelas, Aaron Pérez‐Haase, Tomáš Peterka, Petr Petřík, Gwendolyn Peyre, Oliver L. Phillips, Vadim Prokhorov, Valerijus Rašomavičius, Rasmus Revermann, Gonzalo Rivas‐Torres, J. S. Rodwell, Eszter Ruprecht, Solvita Rūsiņa, Cyrus Samimi, Marco Schmidt, Franziska Schrodt, Hanhuai Shan, П. С. Широких, Jozef Šibík, Urban Šilc, Petr Sklenář, Željko Škvorc, Ben Sparrow, Marta Gaia Sperandii, Zvjezdana Stančić, Jens‐Christian Svenning, Zhiyao Tang, Cindy Q. Tang, Ioannis Tsiripidis, Kim André Vanselow, Kiril Vassilev, Eduardo Vélez‐Martin, Roberto Venanzoni, Alexander Christian Vibrans, Cyrille Violle, Risto Virtanen, Henrik von Wehrden, Viktoria Wagner, Donald A. Walker, Donald M. Waller, Huifang Wang, Karsten Wesche, Timothy J. S. Whitfeld, Wolfgang Willner, Susan K. Wiser, Thomas Wohlgemuth, S. M. Yamalov, Martin Zobel, Helge Bruelheide

Bibliographic record

VenueGlobal Ecology and Biogeography · 2021
Typearticle
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsUniversity of AlbertaUniversité du Québec en Abitibi-TémiscamingueNatural Resources CanadaCanadian Forest Service
FundersH2020 European Research CouncilNational Research, Development and Innovation OfficeAgencia Estatal de InvestigaciónDeutsches Zentrum für integrative Biodiversitätsforschung Halle-Jena-LeipzigNarodowe Centrum NaukiNatural Environment Research CouncilAkademie Věd České RepublikyEusko JaurlaritzaGrantová Agentura České RepublikySchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungHorizon 2020 Framework ProgrammeRussian Foundation for Basic ResearchAgence Nationale de la RechercheSight Research UKDeutsche ForschungsgemeinschaftVolkswagen FoundationNational Science FoundationFundación BBVANational Sleep FoundationVillum Fonden
KeywordsVegetation (pathology)EcologyGeographyEnvironmental sciencePhysical geographyBiology

Abstract

fetched live from OpenAlex

Abstract Motivation Assessing biodiversity status and trends in plant communities is critical for understanding, quantifying and predicting the effects of global change on ecosystems. Vegetation plots record the occurrence or abundance of all plant species co‐occurring within delimited local areas. This allows species absences to be inferred, information seldom provided by existing global plant datasets. Although many vegetation plots have been recorded, most are not available to the global research community. A recent initiative, called ‘sPlot’, compiled the first global vegetation plot database, and continues to grow and curate it. The sPlot database, however, is extremely unbalanced spatially and environmentally, and is not open‐access. Here, we address both these issues by (a) resampling the vegetation plots using several environmental variables as sampling strata and (b) securing permission from data holders of 105 local‐to‐regional datasets to openly release data. We thus present sPlotOpen, the largest open‐access dataset of vegetation plots ever released. sPlotOpen can be used to explore global diversity at the plant community level, as ground truth data in remote sensing applications, or as a baseline for biodiversity monitoring. Main types of variable contained Vegetation plots ( n = 95,104) recording cover or abundance of naturally co‐occurring vascular plant species within delimited areas. sPlotOpen contains three partially overlapping resampled datasets ( c . 50,000 plots each), to be used as replicates in global analyses. Besides geographical location, date, plot size, biome, elevation, slope, aspect, vegetation type, naturalness, coverage of various vegetation layers, and source dataset, plot‐level data also include community‐weighted means and variances of 18 plant functional traits from the TRY Plant Trait Database. Spatial location and grain Global, 0.01–40,000 m². Time period and grain 1888–2015, recording dates. Major taxa and level of measurement 42,677 vascular plant taxa, plot‐level records. Software format Three main matrices (.csv), relationally linked.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.024
Threshold uncertainty score0.989

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0120.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.307
Teacher spread0.282 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations137
Published2021
Admission routes1
Has abstractyes

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