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Record W3096985586 · doi:10.1038/s41467-020-19178-x

Open syntaxin overcomes exocytosis defects of diverse mutants in C. elegans

2020· article· en· W3096985586 on OpenAlexafffund
Chi-Wei Tien, Bin Yu, Mengjia Huang, Karolina P. Stepien, Kyoko Sugita, Xiaoyu Xie, Liping Han, Philippe P. Monnier, Mei Zhen, Josep Rizo, Shangbang Gao, Shuzo Sugita

Bibliographic record

VenueNature Communications · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCellular transport and secretion
Canadian institutionsOntario Brain InstituteLunenfeld-Tanenbaum Research InstituteUniversity of TorontoUniversity Health Network
FundersNational Institute of Neurological Disorders and StrokeNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health ResearchUniversity of British ColumbiaRecruitment Program of Global ExpertsUniversity of TorontoCanadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of CanadaMajor International Joint Research ProgrammeNational Natural Science Foundation of ChinaHuazhong University of Science and TechnologyNational Institutes of HealthU.S. Department of Health and Human ServicesGovernment of CanadaWelch FoundationUniversity of Minnesota
KeywordsExocytosisSyntaxinCell biologyMutantSynaptotagmin 1Syntaxin 3Munc-18Protein subunitLipid bilayer fusionBiologyChemistrySecretionSynaptic vesicleVesicleBiochemistryMembraneGene

Abstract

fetched live from OpenAlex

Abstract Assembly of SNARE complexes that mediate neurotransmitter release requires opening of a ‘closed’ conformation of UNC-64/syntaxin. Rescue of unc-13/Munc13 mutant phenotypes by overexpressed open UNC-64/syntaxin suggested a specific function of UNC-13/Munc13 in opening UNC-64/ syntaxin. Here, we revisit the effects of open unc-64 /syntaxin by generating knockin (KI) worms. The KI animals exhibit enhanced spontaneous and evoked exocytosis compared to WT animals. Unexpectedly, the open syntaxin KI partially suppresses exocytosis defects of various mutants, including snt-1 /synaptotagmin, unc-2/ P/Q/N-type Ca 2+ channel alpha-subunit and unc-31/ CAPS, in addition to unc-13/ Munc13 and unc-10/ RIM, and enhanced exocytosis in tom-1/ Tomosyn mutants. However, open syntaxin aggravates the defects of unc-18/ Munc18 mutants. Correspondingly, open syntaxin partially bypasses the requirement of Munc13 but not Munc18 for liposome fusion. Our results show that facilitating opening of syntaxin enhances exocytosis in a wide range of genetic backgrounds, and may provide a general means to enhance synaptic transmission in normal and disease states.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.031
GPT teacher head0.294
Teacher spread0.263 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations23
Published2020
Admission routes2
Has abstractyes

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Same venueNature CommunicationsSame topicCellular transport and secretionFrench-language works237,207