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Record W3102133957 · doi:10.1002/cyto.b.21971

Flow cytometric method transfer: Recommendations for best practice

2020· article· en· W3102133957 on OpenAlexaff
Maciej Cabanski, Teri Oldaker, Jennifer J. Stewart, Nithianandan Selliah, Steve Eck, Cherie Green, Virginia Litwin, Alessandra Vitaliti

Bibliographic record

VenueCytometry Part B Clinical Cytometry · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicSingle-cell and spatial transcriptomics
Canadian institutionsCaprion (Canada)
Fundersnot available
KeywordsReliability (semiconductor)Computer scienceContext (archaeology)Instrumentation (computer programming)Transfer (computing)Flow (mathematics)Reliability engineeringRisk analysis (engineering)EngineeringMedicineMathematicsBiology

Abstract

fetched live from OpenAlex

As with many aspects of the validation and monitoring of flow cytometric methods, the method transfer processes and acceptance criteria described for other technologies are not fully applicable. This is due to the complexity of the highly configurable instrumentation, the complexity of cellular measurands, the lack of qualified reference materials for most assays, and limited specimen stability. There are multiple reasons for initiating a method transfer, multiple regulatory settings, and multiple context of use. All of these factors influence the specific requirements for the method transfer. This recommendation paper describes the considerations and best practices for the transfer of flow cytometric methods and provides individual case studies as examples. In addition, the manuscript emphasizes the importance of appropriately conducting a method transfer on data reliability.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.139
metaresearch head score (Gemma)0.241
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.861
Threshold uncertainty score0.735

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1390.241
Meta-epidemiology (narrow)0.0030.003
Meta-epidemiology (broad)0.0030.005
Bibliometrics0.0100.007
Science and technology studies0.0040.005
Scholarly communication0.0110.010
Open science0.0130.006
Research integrity0.0180.014
Insufficient payload (model declined to judge)0.0290.051

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.139
GPT teacher head0.422
Teacher spread0.282 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
DomainMethods
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations13
Published2020
Admission routes1
Has abstractyes

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