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Record W3106611719 · doi:10.1002/aps3.11404

Composite modeling of leaf shape along shoots discriminates <i>Vitis</i> species better than individual leaves

2020· article· en· W3106611719 on OpenAlex
Abigail E. Bryson, Maya Wilson Brown, Joey Mullins, Wei Dong, Keivan Bahmani, Nolan Bornowski, Christina Chiu, Philip Engelgau, Bethany Gettings, Fabio Gómez-Cano, Luke M. Gregory, Anna Haber, Donghee Hoh, Emily E. Jennings, Zhongjie Ji, Prabhjot Kaur, Sunil K. Kenchanmane Raju, Y. F. Long, Serena Lotreck, Davis Mathieu, Thilanka Ranaweera, Eleanore J. Ritter, Rie Sadohara, Robert Z. Shrote, Kaila Smith, Scott J. Teresi, Julian Venegas, Hao Wang, McKena Lipham Wilson, Alyssa R. Tarrant, Margaret H. Frank, Zoë Migicovsky, Jyothi Kumar, Robert VanBuren, Jason P. Londo, Daniel H. Chitwood

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueApplications in Plant Sciences · 2020
Typearticle
Languageen
FieldMathematics
TopicMorphological variations and asymmetry
Canadian institutionsDalhousie University
FundersCollege of Engineering, Michigan State UniversityMichigan State UniversityU.S. Department of AgricultureNational Institute of Food and AgricultureNational Science Foundation
KeywordsBiologyShootBotanyLeaf sizeMorphology (biology)Horticulture

Abstract

fetched live from OpenAlex

PREMISE: spp.) over four years and modeled changes in leaf shape along the shoot to determine whether a composite leaf shape comprising all the leaves from a single shoot can better capture the variation and predict species identity compared with individual leaves. METHODS: Using homologous universal landmarks found in grapevine leaves, we modeled various morphological features as polynomial functions of leaf nodes. The resulting functions were used to reconstruct modeled leaf shapes across the shoots, generating composite leaves that comprehensively capture the spectrum of leaf morphologies present. RESULTS: We found that composite leaves are better predictors of species identity than individual leaves from the same plant. We were able to use composite leaves to predict the species identity of previously unassigned grapevines, which were verified with genotyping. DISCUSSION: Observations of individual leaf shape fail to capture the true diversity between species. Composite leaf shape-an assemblage of modeled leaf snapshots across the shoot-is a better representation of the dynamic and essential shapes of leaves, in addition to serving as a better predictor of species identity than individual leaves.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.488
Threshold uncertainty score0.351

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.127
GPT teacher head0.300
Teacher spread0.173 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it