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Record W3106949473 · doi:10.1093/jas/skaa054.212

238 Linking livestock phenomics and precision livestock farming

2020· article· en· W3106949473 on OpenAlexaff
M. Juárez

Bibliographic record

VenueJournal of Animal Science · 2020
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicEffects of Environmental Stressors on Livestock
Canadian institutionsAgriculture and Agri-Food Canada
Fundersnot available
KeywordsPhenomicsLivestockAgricultureAnimal welfareBiotechnologyProductivityAgricultural scienceQuality (philosophy)Production (economics)BusinessBiologyGenomicsEcology

Abstract

fetched live from OpenAlex

Abstract Numerous pre- and post-mortem factors, such as genotype, production system, growth promotants, diet, health events, stress, slaughter age and weight, carcass chilling, and ageing time, have been shown to impact beef production and final product quality. The objective of livestock phenomics is the systematic acquisition of high dimensional phenotypic data, which requires measuring phenomes as they change in response to genetic mutation and environmental influences. Due to the decrease in costs associated to genomics technology and related fields, researchers had to face the so called “phenomic gap”, a lack of sufficient, appropriate phenotypic data. Selecting phenotypes of interests, standardizing methodologies, developing high-throughput data collection systems, systematically recording environmental factors, and integrating bioinformatics are some of the challenges when developing a livestock phenomics program. Precision livestock farming aims at applying continuous, automated real-time monitoring systems to optimize livestock management. The information collected by these systems can be used to optimize individual animal health and welfare, reproductive traits, and productivity, as well as environmental influences. This approach requires the use of novel technologies and the management of large amounts of data. Multiple technologies and sensors are already being used, or have the potential, to monitor important individual traits. These two interdisciplinary fields share multiple objectives that could lead to significant synergies. The complexity of in-farm data collection varies depending on the species and production system, with beef cattle presenting specific challenges. In addition, data collection needs to continue after slaughter, as carcass and meat quality traits are influenced by in vivo practices, determine the final profitability of the system, and need to be taken into consideration to modify management practices. Integrating livestock phenomics and precision livestock farming approaches will lead to a faster development of both fields and an optimal use of resources.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.027

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.006
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0020.003
Science and technology studies0.0000.001
Scholarly communication0.0030.001
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.236
Teacher spread0.212 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2020
Admission routes1
Has abstractyes

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