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Record W3108244608 · doi:10.1002/mp.14845

OpenKBP: The open‐access knowledge‐based planning grand challenge and dataset

2021· article· en· W3108244608 on OpenAlexafffund

Bibliographic record

VenueMedical Physics · 2021
Typearticle
Languageen
FieldPhysics and Astronomy
TopicAdvanced Radiotherapy Techniques
Canadian institutionsPrincess Margaret Cancer CentreUniversity of Toronto
FundersSchool of Natural Sciences, Mathematics, and Engineering, California State University, BakersfieldTata Memorial CentreUniversity of Texas MD Anderson Cancer CenterUniversity of Science and Technology of ChinaPeking UniversityMedizinische Universität WienUniversity of North Carolina at Chapel HillUniversidade de MacauCleveland ClinicHunan UniversityVirginia Commonwealth UniversityAmerican Association of Physicists in MedicineUniversidad Nacional de ColombiaAalto-YliopistoKU LeuvenXidian UniversityAnhui UniversitySichuan UniversityUniversität WienGovernment of CanadaYonsei UniversityJohns Hopkins UniversityMemorial Sloan-Kettering Cancer CenterUniversity of Texas Southwestern Medical CenterRensselaer Polytechnic InstituteHenry Ford Health SystemShanghai Jiao Tong UniversityUniversité Catholique de LouvainMassachusetts General Hospital
KeywordsBenchmark (surveying)BenchmarkingCompetition (biology)Best practice

Abstract

fetched live from OpenAlex

Purpose To advance fair and consistent comparisons of dose prediction methods for knowledge‐based planning (KBP) in radiation therapy research. Methods We hosted OpenKBP, a 2020 AAPM Grand Challenge, and challenged participants to develop the best method for predicting the dose of contoured computed tomography (CT) images. The models were evaluated according to two separate scores: (a) dose score , which evaluates the full three‐dimensional (3D) dose distributions, and (b) dose‐volume histogram (DVH) score , which evaluates a set DVH metrics. We used these scores to quantify the quality of the models based on their out‐of‐sample predictions. To develop and test their models, participants were given the data of 340 patients who were treated for head‐and‐neck cancer with radiation therapy. The data were partitioned into training ( ), validation ( ), and testing ( ) datasets. All participants performed training and validation with the corresponding datasets during the first (validation) phase of the Challenge. In the second (testing) phase, the participants used their model on the testing data to quantify the out‐of‐sample performance, which was hidden from participants and used to determine the final competition ranking. Participants also responded to a survey to summarize their models. Results The Challenge attracted 195 participants from 28 countries, and 73 of those participants formed 44 teams in the validation phase, which received a total of 1750 submissions. The testing phase garnered submissions from 28 of those teams, which represents 28 unique prediction methods. On average, over the course of the validation phase, participants improved the dose and DVH scores of their models by a factor of 2.7 and 5.7, respectively. In the testing phase one model achieved the best dose score (2.429) and DVH score (1.478), which were both significantly better than the dose score (2.564) and the DVH score (1.529) that was achieved by the runner‐up models. Lastly, many of the top performing teams reported that they used generalizable techniques (e.g., ensembles) to achieve higher performance than their competition. Conclusion OpenKBP is the first competition for knowledge‐based planning research. The Challenge helped launch the first platform that enables researchers to compare KBP prediction methods fairly and consistently using a large open‐source dataset and standardized metrics. OpenKBP has also democratized KBP research by making it accessible to everyone, which should help accelerate the progress of KBP research. The OpenKBP datasets are available publicly to help benchmark future KBP research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.008
metaresearch head score (Gemma)0.027
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesOpen science
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.992
Threshold uncertainty score0.078

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0080.027
Meta-epidemiology (narrow)0.0030.001
Meta-epidemiology (broad)0.0010.003
Bibliometrics0.0030.003
Science and technology studies0.0020.001
Scholarly communication0.0030.003
Open science0.0080.007
Research integrity0.0050.004
Insufficient payload (model declined to judge)0.0230.013

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.065
GPT teacher head0.414
Teacher spread0.350 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations114
Published2021
Admission routes2
Has abstractyes

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