MétaCan
Menu
Back to cohort
Record W3111849409 · doi:10.1101/2020.12.08.415554

A protease-initiated model of wound detection

2020· preprint· en· W3111849409 on OpenAlexfundno aff
James T. O’Connor, Aaron C. Stevens, Erica K. Shannon, Fabiha Bushra Akbar, Kimberly S. LaFever, Neil P. Narayanan, M. Shane Hutson, Andrea Page-McCaw

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2020
Typepreprint
Languageen
FieldImmunology and Microbiology
TopicAntimicrobial Peptides and Activities
Canadian institutionsnot available
FundersInstitute of GeneticsNational Institute of General Medical SciencesVanderbilt UniversityNational Institute of Arthritis and Musculoskeletal and Skin DiseasesAmerican Heart Association
KeywordsProteasesProteaseCell biologySignal transductionCytosolReceptorChemistryWound healingBiologyEnzymeBiochemistryImmunology

Abstract

fetched live from OpenAlex

Abstract Wounds trigger surrounding cells to initiate repair, but it is unclear how cells detect wounds. The first known wound response of epithelial cells is a dramatic increase in cytosolic calcium, which occurs within seconds, but it is not known what initiates this calcium response. Specifically, is there an instructive signal detected by cells surrounding wounds? Here we identify a signal transduction pathway in epithelial cells initiated by the G-protein coupled receptor Methuselah-like 10 (Mthl10) activated around wounds by its cytokine ligands, Growth-blocking peptides (Gbps). Gbps are present in unwounded tissue in latent form, requiring proteolytic activation for signaling. Multiple protease families can activate Gbps, suggesting it acts as a detector to signal the presence of several proteases. We present experimental and computational evidence that proteases released during cell lysis serve as the instructive signal from wounds, liberating Gbp ligands to diffuse to the Mthl10 receptors on epithelial cells and activate downstream release of calcium. Thus, the presence of a nearby wound is signaled by the activation of a Gbp protease detector, sensitive to multiple proteases released after cellular damage.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.007
Threshold uncertainty score0.023

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0070.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.030
GPT teacher head0.221
Teacher spread0.191 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2020
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicAntimicrobial Peptides and ActivitiesFrench-language works237,207