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Record W3111854766 · doi:10.1094/phyto-07-20-0267-r

Development and Evaluation of a Model that Predicts Grapevine Anthracnose Caused by <i>Elsinoë ampelina</i>

2020· article· en· W3111854766 on OpenAlexaffabout
Tao Ji, Tito Caffi, Odile Carisse, Ming Li, Vittorio Rossi

Bibliographic record

VenuePhytopathology · 2020
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicHorticultural and Viticultural Research
Canadian institutionsAgriculture and Agri-Food Canada
Fundersnot available
KeywordsBiologyFungicideConidiumColletotrichum gloeosporioidesResidualConcordanceConcordance correlation coefficientHorticultureGrowing seasonDisease controlDiseaseStatisticsBiotechnologyBotanyMathematicsMedicineBioinformaticsInternal medicine

Abstract

fetched live from OpenAlex

is a serious threat in many vineyards, and its control requires repeated application of fungicides, usually on a calendar basis. A better understanding of the pathogen life cycle would help growers manage anthracnose more safely and effectively. After conducting a systematic literature search of grape anthracnose, we used the retrieved information and data to develop a mechanistic model based on systems analysis. The model simulates production and maturation of primary inoculum, infection caused by both primary and secondary conidia, and lesion formation and production of secondary inoculum. The model was validated for its ability to predict first seasonal onset of anthracnose lesions by using 8 years of data collected at Auckland, New Zealand, and disease progress during the season by using 3 years of data collected at Frelighsburg, Canada. Overall, the model provided accurate predictions of infection occurrence, with 0.96 accuracy, 0.91 sensitivity, and 0.97 specificity. The model also showed good accuracy for predicting disease progress, with a concordance correlation coefficient between observed and predicted disease severities of 0.92, a root mean square error of 0.14, and a coefficient of residual mass of 0.06. Although the model failed to predict 10 of 110 real infection periods, these missed infections led to only mild disease symptoms. We therefore conclude that the model is reliable and can be used to reduce the costs of anthracnose management by improving the timing of fungicide applications.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.314
Threshold uncertainty score0.198

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.134
GPT teacher head0.315
Teacher spread0.181 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations18
Published2020
Admission routes2
Has abstractyes

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