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Record W3113100858 · doi:10.1016/j.heliyon.2020.e05652

Improving Alzheimer's stage categorization with Convolutional Neural Network using transfer learning and different magnetic resonance imaging modalities

2020· article· en· W3113100858 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueHeliyon · 2020
Typearticle
Languageen
FieldNeuroscience
TopicBrain Tumor Detection and Classification
Canadian institutionsnot available
FundersNational Institute on AgingEisai IncorporatedNational Institute of Biomedical Imaging and BioengineeringCanadian Institutes of Health ResearchGenentechNational Institutes of HealthTakeda Pharmaceutical CompanyIXICOH. Lundbeck A/SServierU.S. Department of DefenseEli Lilly and CompanyUniversité de BordeauxCentre National de la Recherche ScientifiqueNorthern California Institute for Research and EducationAlzheimer's AssociationFujirebio USPfizerBioClinicaBiogenNovartis Pharmaceuticals CorporationRocheMerckAlzheimer's Drug Discovery FoundationGE HealthcareAlzheimer's Disease Neuroimaging InitiativeMeso Scale DiagnosticsAbbVieFoundation for the National Institutes of Health
KeywordsMagnetic resonance imagingCategorizationConvolutional neural networkTransfer of learningFunctional magnetic resonance imagingModalitiesStage (stratigraphy)PsychologyArtificial intelligenceComputer scienceNeuroscienceMedicineRadiologyBiologySociology

Abstract

fetched live from OpenAlex

BACKGROUND: Alzheimer's Disease (AD) is a neurodegenerative disease characterized by progressive loss of memory and general decline in cognitive functions. Multi-modal imaging such as structural MRI and DTI provide useful information for the classification of patients on the basis of brain biomarkers. Recently, CNN methods have emerged as powerful tools to improve classification using images. NEW METHOD: In this paper, we propose a transfer learning scheme using Convolutional Neural Networks (CNNs) to automatically classify brain scans focusing only on a small ROI: e.g. a few slices of the hippocampal region. The network's architecture is similar to a LeNet-like CNN upon which models are built and fused for AD stage classification diagnosis. We evaluated various types of transfer learning through the following mechanisms: (i) cross-modal (sMRI and DTI) and (ii) cross-domain transfer learning (using MNIST) (iii) a hybrid transfer learning of both types. RESULTS: Our method shows good performances even on small datasets and with a limited number of slices of small brain region. It increases accuracy with more than 5 points for the most difficult classification tasks, i.e., AD/MCI and MCI/NC. COMPARISON WITH EXISTING METHODS: Our methodology provides good accuracy scores for classification over a shallow convolutional network. Besides, we focused only on a small region; i.e., the hippocampal region, where few slices are selected to feed the network. Also, we used cross-modal transfer learning. CONCLUSIONS: Our proposed method is suitable for working with a shallow CNN network for low-resolution MRI and DTI scans. It yields to significant results even if the model is trained on small datasets, which is often the case in medical image analysis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.918
Threshold uncertainty score0.522

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.239
Teacher spread0.202 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it