MétaCan
Menu
Back to cohort
Record W3114554166 · doi:10.1111/vox.13057

Establishment of transfusion‐relevant bacteria reference strains for red blood cells

2020· article· en· W3114554166 on OpenAlexaff
Marcel Prax, Eva Spindler‐Raffel, Carl McDonald, Jennifer Bearne, Masahiro Satake, Moe Kozakai, Julieta Rojo, Kay-Martin Hanschmann, B. Lambrecht, Udo Grundmann, Niamh O’Flaherty, Agata Klimek, Isabelle Bekeredjian‐Ding, Birgit Gathof, Melanie Störmer, Susanne Süßner, Claudia Renke, Cheuk‐Kwong Lee, Cornelius Knabbe, Tanja Vollmer, Shawn D. Keil, Marley E. Shipps, Stephen J. Wagner, Ute Jentsch, Xoliswa Mpumlwana, Marc Cloutier, Peter Bringmann, Thea Lu, Sandra Ramírez‐Arcos, Yuntong Kou, Oleg Krut

Bibliographic record

VenueVox Sanguinis · 2020
Typearticle
Languageen
FieldMedicine
TopicBlood transfusion and management
Canadian institutionsCanadian Blood ServicesUniversity of OttawaHéma-Québec
FundersBundesministerium für Gesundheit
KeywordsSerratia marcescensMicrobiologyListeria monocytogenesYersinia enterocoliticaBacteriaBiologyPseudomonas fluorescensSerratiaYersiniaPseudomonasEscherichia coli

Abstract

fetched live from OpenAlex

Abstract Background and objectives Red blood cell concentrates (RBCC) are susceptible to bacterial contamination despite cold storage. A reliable evaluation of strategies to minimize the risk of RBCC‐associated bacterial transmission requires the use of suitable reference bacteria. Already existing Transfusion‐Relevant Bacteria Reference Strains (TRBRS) for platelet concentrates fail to grow in RBCC. Consequently, the ISBT TTID, Working Party, Bacterial Subgroup, conducted an international study on TRBRS for RBCC. Materials and methods Six bacterial strains (Listeria monocytogenes PEI‐A‐199, Serratia liquefaciens PEI‐A‐184, Serratia marcescens PEI‐B‐P‐56, Pseudomonas fluorescens PEI‐B‐P‐77, Yersinia enterocolitica PEI‐A‐105, Yersinia enterocolitica PEI‐A‐176) were distributed to 15 laboratories worldwide for enumeration, identification, and determination of growth kinetics in RBCC at days 7, 14, 21, 28, 35 and 42 of storage after low‐count spiking (10–25 CFU/RBCC). Results Bacterial proliferation in RBCC was obtained for most strains, except for S. marcescens, which grew only at 4 of 15 laboratories. S. liquefaciens, S. marcescens, P. fluorescens and the two Y. enterocolitica strains reached the stationary phase between days 14 and 21 of RBCC storage with a bacterial concentration of approximately 109 CFU/ml. L. monocytogenes displayed slower growth kinetics reaching 106–107 CFU/ml after 42 days. Conclusion The results illustrate the importance of conducting comprehensive studies to establish well‐characterized reference strains, which can be a tool to assess strategies and methods used to ameliorate blood safety. The WHO Expert Committee on Biological Standardization adopted the five successful strains as official RBCC reference strains. Our study also highlights the relevance of visual inspection to interdict contaminated RBC units.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.264
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations16
Published2020
Admission routes1
Has abstractyes

Explore more

Same venueVox SanguinisSame topicBlood transfusion and managementFrench-language works237,207