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Record W3125882398 · doi:10.1093/infdis/jiab026

Beyond the Absence of CD4 T-Cell Count: A Novel Genetic CD4 T-Cell Deficiency Disorder With a Contingency Plan

2021· letter· en· W3125882398 on OpenAlexafffund
Jean‐Pierre Routy, Stéphane Isnard

Bibliographic record

VenueThe Journal of Infectious Diseases · 2021
Typeletter
Languageen
FieldImmunology and Microbiology
TopicImmunodeficiency and Autoimmune Disorders
Canadian institutionsCanadian Institutes of Health ResearchMcGill University Health Centre
FundersFonds de Recherche du Québec - SantéCanadian Institutes of Health Research
KeywordsMedicineImmunologyVirologyBiology

Abstract

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(See the Major Article by Lisco et al, on pages 645–54.) In healthy individuals, the role of CD4 helper T (Th) cells is to protect the host from pathogens while preventing excessive inflammation to avoid collateral damage [1]. However, their action against invading pathogens, commensal microbes, or self-antigens can still be inappropriate, leading to chronic inflammation and autoimmunity [2]. CD4 T cells are key players in the immune response as they orchestrate CD8 cytotoxic T-cell responses and activate germinal centers, leading to B-cell activation and antibody production, while also exhibiting cytotoxic activity themselves. Five major Th subsets, Th1, Th2, Th17, regulatory T (Treg), and follicular T helper (Tfh) CD4 T cells are distinguished by their specific functions such as expression of lineage markers and transcription factors as well as interleukin production. Among these CD4 T-cell subsets, metabolic heterogeneity, stemness, and plasticity have been observed [3]. Acquired or primary CD4 T-cell immunodeficiencies are characterized by low CD4 T-cell number or dysfunction and lead to recurrent infections, increased risk for virus-induced tumor, and lymphoma. Acquired CD4 T-cell deficiency is the hallmark of HIV infection, where type and severity of opportunistic infections are related to patient CD4 T-cell count decay [4]. In 1993, during the dark age of HIV infections, CD4 T-cell count measurement was common in clinical practice, and an idiopathic nonHIV-related CD4 lymphocytopenia syndrome (ICL) was identified [5–7]. The clinical presentation ranged from asymptomatic to opportunistic infections. This syndrome, which only affects adults, is characterized by CD4 T-cell count below 300 cells/mm3 in the absence of other known immunodeficiencies. The reason underlying the inability to maintain CD4 T-cell homeostasis in ICL remains unclear and perhaps arises from a combination of decreased production, increased destruction, and altered tissue distribution. Primary T-cell immunodeficiencies represent only 5% of primary immunodeficiency cases [8]. Due to their specific and regulatory function, inborn CD4 and CD8 T-cell immunodeficiencies are disorders characterized by alteration of both T- and B-cell function, with fewer critical clinical features than severe combined immunodeficiencies (SCID) [9]. These primary CD4 and CD8 T-cell deficiencies are further characterized by the presence or absence of major histocompatibility complex (MHC) class II or I expression on T cells, respectively, and by the absence of hypogammaglobulinemia. The clinical presentations range from asymptomatic to persistent skin warts and molluscum contagiosum, and recurrent respiratory and/or gastrointestinal infections. The onset of symptoms varies from early childhood to middle age in both men and women. In contrast to SCID, CD4 or CD8 T-cell deficiencies do not present with lymphopenia (defined by total T cells below 300 cells/mm3). The absence of lymphopenia in such T-cell deficiencies immediately raises the question of what lymphocyte subsets replace or compensate for the absence of CD4 or CD8 T cells. Fernandes et al in 2019 reported a case of an adult woman born from consanguineous parents with recurrent treatment-refractory skin warts since childhood, in the absence of either recurrent infections or chronic viral infections [10]. Flow cytometry analyses revealed the absence of any CD4 T cells and lack of CD4 expression at the cell surface or intracellular compartment of T cells. The absence of CD4 expression was also observed on myeloid cells, including monocytes and dendritic cells. This patient’s selective CD4 molecule deficiency was caused by a homozygous autosomal recessive mutation in the CD4 gene, which was reflected in both lymphoid and myeloid cell lineages, leading to an unexpectedly nonsevere clinical presentation. Increased counts of B-cell and naive CD8 T-cell counts were noted along with elevated frequency of CD4−CD8− double-negative (DN) T cells (CD3+, TCRαβ +, TCRγδ−). These odd DN T cells showed some CD4 phenotypic markers and functions. This case mimics a CD4 knockout mouse model, indicating that DN helper T cells and Treg can be produced in the absence of CD4 and that these cells are able, in part, to replace the functional roles usually played by CD4 T cells [11]. In this issue of The Journal of Infectious Diseases, Lisco et al [12] confirm and expand existing knowledge on this rare inborn-error immunodeficiency, identifying a family with a novel primary immunodeficiency mutation that prevents the translation-initiation of the mRNA encoding the CD4 protein, thus abrogating the presence of membrane and plasma soluble CD4 in blood. In this case, a 22-year-old woman with homozygous disruption of the gene encoding the CD4 molecule was characterized by a complete loss of CD4 expression in lymphoid and myeloid lineages with distinctive clinical and immunological features. The mother, father, and brother were heterozygous for the same variant. The patient presented with recurrent respiratory infections and large warts on her trunk and extremities, in the absence of any chronic viral infections. At first glance, the presence of warts may suggest a warts, hypogammaglobulinemia, infections, and myelokathexis (WHIM) disorder, a condition where neutrophils are being trapped in the bone marrow [13, 14]. However, the patient had normal immunoglobulin values and isotype distribution, making the diagnosis of this combined immunodeficiency unlikely. Despite total absence of CD4 T cells in the blood, the patient presented with a normal total lymphocyte and CD8 T-cell counts. Sequential flow cytometry staining during and months after hospitalization confirmed the absence of extracellular and intracellular CD4 expression on both T cells and monocytes. The lack of CD4 T-cell expression was further confirmed by the inability of the patient’s cells to be infected by HIV. Investigators achieved a tour de force by assessing CD4 expression in tissue. Immunohistochemical evaluation of CD4 expression was performed on an inguinal lymph node biopsy, confirming the total absence of CD4 expression, while the lymph node architecture and the B-cell and CD8 T-cell distributions were partially preserved in follicular and parafollicular zones, respectively. Furthermore, other biopsies performed in the ileum, cecum, skin warts, and in bone marrow were all negative for CD4 expression. In contrast to HIV infection where a CD4 T-cell count below 200 cells/mm3 is associated with life-threatening opportunistic infections, the complete multilineage loss of CD4 in the patient did not translate into immunosuppression earlier in life. To address this issue, the investigators identified a 10-fold expansion of DN TCRαβ + T cells in blood compared to control subjects, with preserved TCRγδ and mucosal-associated invariant T (MAIT) cells, rare subsets of lymphocytes bridging innate and adaptative immunity. Surprisingly, these DN T cells were able to mimic several phenotypic and functional characteristics of CD4 T cells with a normal naive/memory subset ratio and Treg frequency, as well as an intact interleukin-7 (IL-7) stimulation pathway, a signature cytokine for T-cell homeostasis [15]. DN T cells can act as surrogates for CD4 T-cell specialized functions, as previously reported in a CD4 knockout mouse model and in the proband reported by Fernandes et al [10]. Lisco et al demonstrated that both CD8 and DN T cells were able to exert an MHC-II–restricted CMV-specific activity [12], illustrating a novel aspect of T-cell plasticity in a context of a primary immunodeficiency. However, plasticity had its own limits, as the lack of CD4-mediated B-cell helper functions led to partially regressed germinal centers. Indeed, the low frequency of Tfh cells, which are important for the promotion of germinal center formation and antibody maturation, contributed to the relative expansion of naive B cells with low frequency of plasmablasts or plasma cells in the biopsied lymph node. As expected from other noncombined T-cell deficiencies, levels of all immunoglobulins were normal and long-lived plasma cells were present in the bone marrow. However, a global functional immune evaluation was conducted by assessing vaccine responses for neoantigens (hepatitis A and B, Meningococcus, and Haemophilus influenzae) on antibody plasma titers, which were found to be short-lived. Moreover, as antigen-specific CD4 T cells contribute to natural killer (NK) activation, their cytotoxic function was found to be impaired and did not recover upon exogenous IL-2 stimulation. Finally, as CD4 engagement by MHC-II also contributes to differentiation and function of monocytes, lipopolysaccharide or endotoxin-stimulated monocytes were found to be dysfunctional as determined by their blunted ability to secrete inflammatory cytokines. This well documented case report indicates for the first time that loss of CD4 expression in blood, lymphoid tissues, and bone marrow induces defects in humoral and innate antiviral immunity. Despite total absence of CD4-expressing cells, the patient presented with a modest infection history compared to other primary immunodeficiencies or HIV infection. This case and the one reported by Fernandes et al [10] indicate that functional MHC-II–restricted DN and Treg cells can be generated independently of CD4. Cell plasticity allowed a contingency plan for CD8 and DN T cells to act as “CD4 T-like” cells, including the induction of MHC-II–restricted proliferative response. However, defects in B-cell, NK, and monocyte functions were observed. Such Mother Nature’s experiments of CD4 deficiency contribute to a better understanding of CD4 T-cell function in mucosal and skin protection from bacterial and viral infections. Nevertheless, the compensatory expansion of DN T cells present in those with primary CD4 deficiencies was not observed in HIV infection or in ICL [7]. Evaluation of bone marrow and thymic determinants of such T-cell plasticity will be needed for these rare patients, as well as in the context of HIV infection, as such DN cells are noninfectable, and for COVID-19, where CD4 T-cell decay is a predictor for undesirable clinical outcomes [16]. Acknowledgments. The authors are grateful to Dr Nicole F. Bernard, Mr John Lin, and Dr Léna Royston for helpful discussion and comments; and Angie Massicotte, Josée Girouard, and Cezar Iovi for coordination and assistance. Financial support. This work was supported by the Fonds de la Recherche Québec-Santé (FRQ-S): Réseau SIDA/Maladies Infectieuses and Thérapie Cellulaire; the Canadian Institutes of Health Research (CIHR; grant numbers MOP 103230 and PTJ 166049); the Vaccines and Immunotherapies Core of the CIHR Canadian HIV Trials Network (grant number CTN 257); and the CIHR Canadian HIV Cure Enterprise (grant number HB2-164064). S. I. is supported by a FRQ-S and CIHR-CTN postdoctoral fellowship. J.-P. R. is the holder of the Louis Lowenstein Chair in Hematology and Oncology, McGill University. Potential conflicts of interest. Both authors: No reported conflicts of interest. Both authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.008
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Case report · Consensus signal: Case report
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.023
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.008
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0030.003
Scholarly communication0.0020.003
Open science0.0020.001
Research integrity0.0230.012
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.189
Teacher spread0.184 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designCase report
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2021
Admission routes2
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