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Record W3130055355 · doi:10.1038/s41598-021-83150-y

Dimensionality reduction using singular vectors

2021· article· en· W3130055355 on OpenAlexafffund
Majid Afshar, Hamid Usefi

Bibliographic record

VenueScientific Reports · 2021
Typearticle
Languageen
FieldEngineering
TopicAdvanced Numerical Analysis Techniques
Canadian institutionsMemorial University of Newfoundland
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsDimensionality reductionComputer scienceReduction (mathematics)Data miningComputational biologyPattern recognition (psychology)Artificial intelligenceMathematicsBiology

Abstract

fetched live from OpenAlex

A common problem in machine learning and pattern recognition is the process of identifying the most relevant features, specifically in dealing with high-dimensional datasets in bioinformatics. In this paper, we propose a new feature selection method, called Singular-Vectors Feature Selection (SVFS). Let [Formula: see text] be a labeled dataset, where [Formula: see text] is the class label and features (attributes) are columns of matrix A. We show that the signature matrix [Formula: see text] can be used to partition the columns of A into clusters so that columns in a cluster correlate only with the columns in the same cluster. In the first step, SVFS uses the signature matrix [Formula: see text] of D to find the cluster that contains [Formula: see text]. We reduce the size of A by discarding features in the other clusters as irrelevant features. In the next step, SVFS uses the signature matrix [Formula: see text] of reduced A to partition the remaining features into clusters and choose the most important features from each cluster. Even though SVFS works perfectly on synthetic datasets, comprehensive experiments on real world benchmark and genomic datasets shows that SVFS exhibits overall superior performance compared to the state-of-the-art feature selection methods in terms of accuracy, running time, and memory usage. A Python implementation of SVFS along with the datasets used in this paper are available at https://github.com/Majid1292/SVFS .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.004
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.006
Meta-epidemiology (narrow)0.0020.000
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0040.004
Science and technology studies0.0010.001
Scholarly communication0.0020.001
Open science0.0010.002
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0030.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.260
Teacher spread0.245 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations13
Published2021
Admission routes2
Has abstractyes

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