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Record W3132160521 · doi:10.1371/journal.pone.0243841

An R Package for Computing Canadian Assessment of Physical Literacy (CAPL) scores and interpretations from raw data

2021· article· en· W3132160521 on OpenAlexaffabout
Joel D. Barnes, Michelle Guerrero

Bibliographic record

VenuePLoS ONE · 2021
Typearticle
Languageen
FieldMedicine
TopicObesity, Physical Activity, Diet
Canadian institutionsChildren's Hospital of Eastern Ontario
Fundersnot available
KeywordsRaw dataComputer scienceSource codeFunction (biology)Data miningProgramming language

Abstract

fetched live from OpenAlex

The Canadian Assessment of Physical Literacy (CAPL) is the first comprehensive protocol designed to assess a child's level of physical literacy. Current approaches to analyzing CAPL-2 raw data are tedious, inefficient, and/or can lead to computation errors. In this paper we introduce the capl R package (open source), designed to compute and visualize CAPL-2 scores and interpretations from raw data. The capl package takes advantage of the R environment to provide users with a fast, efficient, and reliable approach to analyzing their CAPL-2 raw data and a "quiet" user experience, whereby "noisy" error messages are suppressed via validation. We begin by discussing several preparatory steps that are required prior to using the capl package. These steps include preparing, formatting, and importing CAPL-2 raw data. We then use demo data to show that computing the CAPL-2 scores and interpretations is as simple as executing one line of code. This one line of code uses the main function in the capl package (get_capl()) to compute 40 variables within a matter of seconds. Next, we showcase the helper functions that are called within the main function to compute individual variables and scores for each test element within the four domains as well as an overall physical literacy score. Finally, we show how to visualize CAPL-2 results using the ggplot2 R package.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.008
metaresearch head score (Gemma)0.087
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Software · Consensus signal: none
Teacher disagreement score0.969
Threshold uncertainty score0.324

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0080.087
Meta-epidemiology (narrow)0.0030.002
Meta-epidemiology (broad)0.0030.003
Bibliometrics0.0040.005
Science and technology studies0.0010.001
Scholarly communication0.0040.002
Open science0.0030.004
Research integrity0.0010.004
Insufficient payload (model declined to judge)0.0970.049

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.059
GPT teacher head0.348
Teacher spread0.289 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2021
Admission routes2
Has abstractyes

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Same venuePLoS ONE→Same topicObesity, Physical Activity, Diet→French-language works237,207→