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Record W3135492813 · doi:10.3389/978-2-88966-027-8

A Next-Generation of Biomonitoring to Detect Global Ecosystem Change

2020· book· en· W3135492813 on OpenAlexaff
Andreas Makiola, Zacchaeus G. Compson, Donald J. Baird, Matthew A. Barnes, Sam P. Boerlijst, Agnès Bouchez, Georgina Brennan, Alex Bush, Elsa Canard, Tristan Cordier, Simon Creer, R. Allen Curry, Alex J. Dumbrell, Dominique Gravel, Mehrdad Hajibabaei, Berry van der Hoorn, Philippe Jarne, J. Iwan Jones, Battle Karimi, François Keck, Martyn Kelly, Ineke E. Knot, Louie Krol, François Massol, Wendy A. Monk, John Murphy, Jan Pawłowski, Timothée Poisot, Teresita M. Porter, Kate C. Randall, Emma Ransome, Virginie Ravigné, Alan Raybould, Stephane S. Robin, Maarten Schrama, Bertrand Schatz, Alireza Tamaddoni‐Nezhad, Krijn B. Trimbos, Corinne Vacher, Valentin Vasselon, Susie Wood, Guy Woodward, David A. Bohan

Bibliographic record

VenueFrontiers research topics · 2020
Typebook
Languageen
FieldEnvironmental Science
TopicEnvironmental DNA in Biodiversity Studies
Canadian institutionsUniversité de MontréalUniversity of GuelphUniversité de SherbrookeUniversity of New BrunswickOntario GenomicsEnvironment and Climate Change Canada
FundersAgence Nationale de la Recherche
KeywordsBiomonitoringEcosystemEnvironmental scienceEnvironmental resource managementEcologyBiology

Abstract

fetched live from OpenAlex

Classical biomonitoring techniques have focused primarily on measures linked tovarious biodiversity metrics and indicator species. Next-generation biomonitoring (NGB)describes a suite of tools and approaches that allow the examination of a broaderspectrum of organizational levels—from genes to entire ecosystems. Here, we frame10 key questions that we envisage will drive the field of NGB over the next decade. Whilenot exhaustive, this list covers most of the key challenges facing NGB, and provides thebasis of the next steps for research and implementation in this field. These questionshave been grouped into current- and outlook-related categories, corresponding to theorganization of this paper.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.063
Threshold uncertainty score0.212

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0030.003
Science and technology studies0.0010.001
Scholarly communication0.0040.006
Open science0.0010.002
Research integrity0.0020.003
Insufficient payload (model declined to judge)0.0630.028

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.193
GPT teacher head0.321
Teacher spread0.127 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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