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Record W3142062327 · doi:10.9778/cmajo.20200140

Completeness of reporting for COVID-19 case reports, January to April 2020: a meta-epidemiologic study

2021· article· en· W3142062327 on OpenAlexaffvenue
Michael A. Scaffidi, Nikko Gimpaya, Juana Li, Rishi Bansal, Yash Verma, Karam Elsolh, Gemma M. Donn, A Panjwani, Rishad Khan, Samir C. Grover

Bibliographic record

VenueCMAJ Open · 2021
Typearticle
Languageen
FieldMedicine
TopicCOVID-19 and healthcare impacts
Canadian institutionsQueen's UniversityUniversity of TorontoSt. Michael's Hospital
FundersAmgen
KeywordsCoronavirus disease 2019 (COVID-19)PandemicCompleteness (order theory)2019-20 coronavirus outbreakMedicineSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)CoronavirusMeta-analysisMEDLINEDiseaseInfectious disease (medical specialty)OutbreakVirologyPathologyPolitical scienceMathematics

Abstract

fetched live from OpenAlex

BACKGROUND: The quality of case reports, which are often the first reported evidence for a disease, may be negatively affected by a rush to publication early in a pandemic. We aimed to determine the completeness of reporting (COR) for case reports published on coronavirus disease 2019 (COVID-19). METHODS: We conducted a systematic search of the PubMed database for all single-patient case reports of confirmed COVID-19 published from Jan. 1 to Apr. 24, 2020. All included case reports were assessed for adherence to the CARE (Case Report) 31-item checklist, which was used to create a composite COR score. The primary outcome was the mean COR score assessed by 2 independent raters. Secondary outcomes included whether there was a change in overall COR score with certain publication factors (e.g., publication date) and whether there was a linear relation between COR and citation count and between COR scores and social media attention. RESULTS: Our search identified 196 studies that were published in 114 unique journals. We found that the overall mean COR score was 54.4%. No one case report included all of the 31 CARE checklist items. There was no significant correlation between COR with either citation count or social media attention. INTERPRETATION: We found that the overall COR for case reports on COVID-19 was poor. We suggest that journals adopt common case-reporting standards to improve reporting quality.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Direct model labels (unvalidated)

Per-model category and study-design labels from the labeling rounds. They are machine output, unvalidated, and the disagreement between models ships as data. No study design here is MEDLINE-validated yet.

Model armCategoriesStudy designConfidence
gemmaMetaresearchMeta-epidemiology (broad)
Domain: Reporting · Genre: Empirical
About the Canadian research system: no · About a Canadian topic: no
Observationalhigh
gptMetaresearchMeta-epidemiology (narrow)Meta-epidemiology (broad)
Domain: Reporting · Genre: Empirical
About the Canadian research system: no · About a Canadian topic: no
Observationalhigh
models splitAgreement compares identical category sets and study designs across arms.

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.095
metaresearch head score (Gemma)0.309
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Meta-epidemiology (broad)
Consensus categoriesnone
DomainCandidate signal: Reporting · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.994
Threshold uncertainty score0.505

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0950.309
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0060.025
Bibliometrics0.0150.021
Science and technology studies0.0010.001
Scholarly communication0.0060.005
Open science0.0030.003
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.523
GPT teacher head0.546
Teacher spread0.023 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Labeled directly by 2 models reading the full record.

MetaresearchMeta-epidemiology (broad)Meta-epidemiology (narrow)

The models disagree on parts of this classification; every voice is preserved in the section at the end of the page.

Study designObservational
DomainReporting
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations15
Published2021
Admission routes2
Has abstractyes

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