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Record W3148666541 · doi:10.21105/joss.03074

gaussplotR: Fit, Predict and Plot 2D-Gaussians in R

2021· article· en· W3148666541 on OpenAlexaff
Vikram B. Baliga

Bibliographic record

VenueThe Journal of Open Source Software · 2021
Typearticle
Languageen
FieldEnvironmental Science
TopicRemote Sensing in Agriculture
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsPlot (graphics)MathematicsStatistics

Abstract

fetched live from OpenAlex

Should the need to model the relationship between bivariate data and a response variable arise, two-dimensional (2D) Gaussian models are often the most appropriate choice.For example, Priebe et al. (2003) characterized motion-sensitive neurons in the brains of macaques by fitting 2D-Gaussian functions to neurons' response rates as spatial and temporal frequencies of visual stimuli were varied.The width and orientation of these fitted 2D-Gaussian surfaces provides insight on whether a neuron is "tuned" to particular spatial or temporal domains.Twodimensional Gaussians are also used in other scientific disciplines such as physics (Kravtsov & Berczynski, 2004;Z. Wu & Guo, 1998), materials sciences (Riekel et al., 1999), and image processing (Hanumantharaju et al., 2013;Ketenci & Gencturk, 2013), particularly in medical imaging (Qadir et al., 2021;J. Wu et al., 2019).Fitting 2D-Gaussian models to data is not always a straightforward process, as finding appropriate values for the model's parameters relies on complex procedures such as non-linear least-squares.gaussplotR is an R package that is designed to fit 2D-Gaussian surfaces to data.Should a user supply bivariate data (i.e., x-values and y-values) along with a univariate response variable, functions within gaussplotR will allow for the automatic fitting of a 2D-Gaussian model to the data.Fitting the model then enables the user to characterize various properties of the Gaussian surface (e.g., computing the total volume under the surface).Further, new data can be predicted from models fit via gaussplotR, which in combination with the package's plotting functions, can enable smoother-looking plots from relatively sparse input data.In principle, tools within gaussplotR have broad applicability to a variety of scientific disciplines.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.024
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Software · Consensus signal: Software
Teacher disagreement score0.145
Threshold uncertainty score0.484

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0060.024
Meta-epidemiology (narrow)0.0040.002
Meta-epidemiology (broad)0.0030.003
Bibliometrics0.0030.002
Science and technology studies0.0010.001
Scholarly communication0.0030.004
Open science0.0050.003
Research integrity0.0020.005
Insufficient payload (model declined to judge)0.1450.092

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.248
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2021
Admission routes1
Has abstractyes

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