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Record W3157330016 · doi:10.1101/2021.05.03.442479

Circadian pacemaker neurons display co-phasic rhythms in basal calcium level and in fast calcium fluctuations

2021· preprint· en· W3157330016 on OpenAlexfundno aff
Xitong Liang, Timothy E. Holy, Paul H. Taghert

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2021
Typepreprint
Languageen
FieldNeuroscience
TopicCircadian rhythm and melatonin
Canadian institutionsnot available
FundersCenter for Cellular Imaging, Washington UniversityNational Institutes of HealthOtsuka Canada Pharmaceutical
KeywordsCalciumCircadian rhythmT-type calcium channelVoltage-dependent calcium channelBiologyR-type calcium channelCalcium in biologyCalcium channelRhythmInternal medicineNeuroscienceEndocrinologyP-type calcium channelCalcium signalingMedicine

Abstract

fetched live from OpenAlex

Abstract Circadian pacemaker neurons in the Drosophila brain display daily rhythms in the levels of intracellular calcium. These calcium rhythms are driven by molecular clocks and are required for normal circadian behavior. To study their biological basis, we employed genetic manipulations in conjunction with in vivo light-sheet microscopy to measure calcium dynamics in individual pacemaker neurons over complete 24-hour periods. We found co-phasic daily rhythms in basal calcium levels and in high frequency calcium fluctuations. Further we found that the rhythms of basal calcium levels require the activity of the IP3R , a channel that mediates calcium fluxes from internal endoplasmic reticulum (ER) calcium stores. Independently, the rhythms of fast calcium fluctuations required the T-type voltage-gated calcium channel, a conductance that mediates extracellular calcium influx. These results suggest that Drosophila molecular clocks regulate IP3R and T-type channels to generate coupled rhythms in basal calcium and in fast calcium fluctuations, respectively. We propose that both internal and external calcium fluxes are essential for circadian pacemaker neurons to provide rhythmic outputs, and thereby regulate the activities of downstream brain centers.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.273
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2021
Admission routes1
Has abstractyes

Explore more

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