A functional genomics approach in identifying the underlying gene for the E8 maturity locus in soybean (Glycine max)
Bibliographic record
Abstract
Soybean is an economically important crop that has rapidly expanded throughout Western Canada and Northern regions.To continue this expansion, understanding the time of flowering and maturity pathway is an important factor for soybean adaptation.So far, eleven maturity loci have been identified for this pathway, however the underlying gene for one third of them remain unknown.The E8 maturity locus was previously identified in our lab on chromosome 4 using classical breeding practices and genome wide SSR marker analysis.A bioinformatics approach utilizing PIPE (Protein-protein Interaction Prediction Engine) along with a plethora of functional genomics resources and prediction tools has short listed this region down to 3 promising candidates; Glyma.04G124600,Glyma.04G140000, and Glyma.04G101500,all involved in light perception.Further analysis of these candidates will reveal the underlying gene for E8 and shed light on the flowering mechanism in the important food crop soybean.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.001 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.001 |
| Insufficient payload (model declined to judge) | 0.002 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".