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Record W3158454174 · doi:10.1002/humu.24211

New cases that expand the genotypic and phenotypic spectrum of Congenital NAD Deficiency Disorder

2021· article· en· W3158454174 on OpenAlexafffund
Justin O. Szot, Anne Slavotinek, Karen Chong, Oliver Brandau, Marjan M. Nezarati, Millan S. Patel, W. Patrick Devine, Shannon Rego, Alicia P. Acyinena, Patrick Shannon, Diane Myles‐Reid, Susan Blasér, Tim Van Mieghem, Halenur Yavuz‐Kienle, Heyko Skladny, Kristen Miller, Miereia D. T. Riera, Sílvia Arévalo, Eduardo F. Tizzano, Lucie Dupuis, Dimitri J. Stavropoulos, Vanda McNiven, Roberto Mendoza‐Londono, Alison M. Elliott, Robert S. Phillips, Gavin Chapman, Sally L. Dunwoodie

Bibliographic record

VenueHuman Mutation · 2021
Typearticle
Languageen
FieldMedicine
TopicSirtuins and Resveratrol in Medicine
Canadian institutionsHospital for Sick ChildrenUniversity of British ColumbiaSickKids FoundationUniversity of TorontoNorth York General HospitalMount Sinai Hospital
FundersNational Health and Medical Research CouncilMedical Research CouncilNew South Wales GovernmentNational Human Genome Research InstituteUniversity of TorontoOffice of Health and Medical Research
KeywordsNAD+ kinaseMissense mutationBiologyFrameshift mutationGeneticsComplementationNicotinamide adenine dinucleotideKynurenine pathwayPhenotypeCongenital disorderEnzymeGeneBiochemistryKynurenineTryptophanAmino acid

Abstract

fetched live from OpenAlex

Nicotinamide adenine dinucleotide (NAD) is an essential coenzyme involved in over 400 cellular reactions. During embryogenesis, mammals synthesize NAD de novo from dietary l -tryptophan via the kynurenine pathway. Biallelic, inactivating variants in three genes encoding enzymes of this biosynthesis pathway (KYNU, HAAO, and NADSYN1) disrupt NAD synthesis and have been identified in patients with multiple malformations of the heart, kidney, vertebrae, and limbs; these patients have Congenital NAD Deficiency Disorder HAAO and four families with biallelic variants in KYNU. These patients present similarly with multiple malformations of the heart, kidney, vertebrae, and limbs, of variable severity. We show that each variant identified in these patients results in loss-of-function, revealed by a significant reduction in NAD levels via yeast genetic complementation assays. For the first time, missense mutations are identified as a cause of malformation and shown to disrupt enzyme function. These missense and frameshift variants cause moderate to severe NAD deficiency in yeast, analogous to insufficient synthesized NAD in patients. We hereby expand the genotypic and corresponding phenotypic spectrum of Congenital NAD Deficiency Disorder.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.480
Threshold uncertainty score0.492

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.284
Teacher spread0.260 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations30
Published2021
Admission routes2
Has abstractyes

Explore more

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