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Record W3164528947 · doi:10.1029/2019jg005542

Assessing Geochemical Bioenergetics and Microbial Metabolisms at Three Terrestrial Sites of Serpentinization: The Tablelands (NL, CAN), The Cedars (CA, USA), and Aqua de Ney (CA, USA)

2021· article· en· W3164528947 on OpenAlexaff
Melissa C. Cook, Jennifer G. Blank, Shino Suzuki, Kenneth H. Nealson, Penny L. Morrill

Bibliographic record

VenueJournal of Geophysical Research Biogeosciences · 2021
Typearticle
Languageen
FieldEnvironmental Science
TopicMethane Hydrates and Related Phenomena
Canadian institutionsMemorial University of Newfoundland
Fundersnot available
KeywordsMicrocosmMethanogenesisEnvironmental chemistryMethaneAnaerobic oxidation of methaneChemistryBioenergeticsGroundwaterCarbon monoxideGeologyCatalysisBiochemistryOrganic chemistry

Abstract

fetched live from OpenAlex

Abstract The subsurface process of serpentinization creates an extreme environment for microbial life. This environment includes reducing, ultra‐basic groundwater that is limited in electron acceptors. Despite these challenging conditions, there is a great deal of potential energy available to support microbial metabolisms both in the anaerobic subsurface and in aerobic surface environments where serpentinization associated groundwater discharges. In this study, the available energy was quantified through the calculation of chemical affinities, Ar, for three sites of active serpentinization in North America: the Tablelands (NL, CAN), The Cedars (CA, USA), and Aqua de Ney (CA, USA). The results showed that Ar values for each reaction were similar for all sites studied; however, the available energy varied a great deal from reaction to reaction. For example, the reaction of carbon monoxide oxidation provided the most energy to the system followed closely by hydrogen oxidation and methanotrophy. Potential microbial metabolisms were tested, simulating surface and subsurface conditions, in a laboratory‐based setting using microcosms with materials from each site. During these microcosm experiments, carbon monoxide oxidation was not observed, and there was little evidence of methane oxidation. Unexpectedly, microbial methanogenesis was observed in methane oxidation microcosms using material collected from The Cedars. The microbial production of methane occurred despite the addition of electron acceptors demonstrating the broad tolerance of methanogens at The Cedars for less reducing conditions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.786
Threshold uncertainty score0.426

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.044
GPT teacher head0.319
Teacher spread0.275 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2021
Admission routes1
Has abstractyes

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