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Record W3165398058 · doi:10.3390/cancers13112729

A Collaborative Model to Implement Flexible, Accessible and Efficient Oncogenetic Services for Hereditary Breast and Ovarian Cancer: The C-MOnGene Study

2021· article· en· W3165398058 on OpenAlexaffabout
Julie Lapointe, Michel Dorval, Jocelyne Chiquette, Yann Joly, Jason R. Guertin, Maude Laberge, Jean Gekas, Johanne Hébert, Marie‐Pascale Pomey, Tania Cruz Mariño, Omar Touhami, Arnaud Blanchet Saint-Pierre, Sylvain Gagnon, Karine Bouchard, Josée Rhéaume, Karine Boisvert, Claire Brousseau, Lysanne Castonguay, Sylvain Fortier, Isabelle Gosselin, Philippe Lachapelle, S. Lavoie, Brigitte Poirier, Marie‐Claude Renaud, Maria-Gabriela Ruizmangas, Alexandra Sebastianelli, Stéphane Roy, Madeleine Côté, Marie-Michelle Racine, Marie-Claude Roy, Nathalie Côté, Carmen Brisson, Nelson Charette, Valérie Faucher, Josianne Leblanc, Marie-Ève Dubeau, Marie Plante, Christine Desbiens, Martín Beaumont, Jacques Simard, Hermann Nabi

Bibliographic record

VenueCancers · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBRCA gene mutations in cancer
Canadian institutionsUniversité du Québec à RimouskiCentre Intégré Universitaire de Santé et de Services Sociaux du Saguenay–Lac-Saint-JeanCentre Hospitalier de l’Université de MontréalMcGill UniversityCentre intégré de santé et de services sociaux de Chaudière-AppalachesUniversité de MontréalUniversité LavalCentre Intégré de Santé et de Services Sociaux du Bas-Saint-LaurentMcGill University Health CentreHôpital du Saint-Sacrement
Fundersnot available
KeywordsGenetic counselingContext (archaeology)Breast cancerCollaborative CareComputer scienceMedicineFamily medicineGynecologyMedical physicsCancerInternal medicinePrimary careBiologyGenetics

Abstract

fetched live from OpenAlex

Medical genetic services are facing an unprecedented demand for counseling and testing for hereditary breast and ovarian cancer (HBOC) in a context of limited resources. To help resolve this issue, a collaborative oncogenetic model was recently developed and implemented at the CHU de Québec-Université Laval; Quebec; Canada. Here, we present the protocol of the C-MOnGene (Collaborative Model in OncoGenetics) study, funded to examine the context in which the model was implemented and document the lessons that can be learned to optimize the delivery of oncogenetic services. Within three years of implementation, the model allowed researchers to double the annual number of patients seen in genetic counseling. The average number of days between genetic counseling and disclosure of test results significantly decreased. Group counseling sessions improved participants' understanding of breast cancer risk and increased knowledge of breast cancer and genetics and a large majority of them reported to be overwhelmingly satisfied with the process. These quality and performance indicators suggest this oncogenetic model offers a flexible, patient-centered and efficient genetic counseling and testing for HBOC. By identifying the critical facilitating factors and barriers, our study will provide an evidence base for organizations interested in transitioning to an oncogenetic model integrated into oncology care; including teams that are not specialized but are trained in genetics.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.027
metaresearch head score (Gemma)0.023
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.267
Threshold uncertainty score0.532

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0270.023
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0070.003
Scholarly communication0.0030.003
Open science0.0030.008
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.325
Teacher spread0.310 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations13
Published2021
Admission routes2
Has abstractyes

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