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Proteomic analysis of microparticles produced by wound healing myofibroblasts cells

2013· article· en· W3167010525 on OpenAlexaff
Amélie Langlois, Sébastien Larochelle, Samir Siagh, Hervé Genest, Véronique Moulin

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldMedicine
TopicTissue Engineering and Regenerative Medicine
Canadian institutionsCentre hospitalier universitaire de QuébecUniversité LavalHôpital de l'Enfant-Jésus
Fundersnot available
KeywordsProteomeDepolymerizationChemistryBiochemistryWound healingCytoskeletonCell biologyMolecular biologyBiologyGenetics

Abstract

fetched live from OpenAlex

Production of microparticles (MP) by myofibroblasts (Wmyo) during wound healing process is a new finding in the field of cellular communication. To determine the proteome of MP, the 2D‐DIGE method was performed over MP produced by 6 different populations of Wmyo. Each gel allowed us to analysed MP extravesicular proteins and total protein content, due to the use of different Cydye labelling methods. Fluorescent labelling of each gel were acquired using Typhoon Variable Mode Imager system and all images were analysed by Delta2D software. We were looking for highly expressed and extremely conserved proteins. With these parameters and Saffold Viewer software, 133 spots were sent to mass spectrometry analysis for further characterisation. 292 different proteins were identified with a 95% probability of being peptides unique to one protein. This wide variety of proteins included several enzymes such as fructose‐biphosphate aldolase A, L‐lactate dehydrogenase and ATP synthase. Lactadherin, Annexin A2, filamin‐A serpin H1 and elongation factors were also revealed in all samples studied. A large proportion of all the protein listed corresponded to cytoskeleton‐related protein. Knowledge of the protein content of MP used by Wmyo to communicate between each other will enable a better comprehension of the mechanism of wound healing process. Research Support: Thecell network‐FRQS.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.000
Threshold uncertainty score0.001

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.242
Teacher spread0.230 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2013
Admission routes1
Has abstractyes

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