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Genetic and clinical determinants of CYP3A4 activity in patients using 4β‐hydroxycholesterol as an in vivo probe

2013· article· en· W3167472691 on OpenAlexaff
Inna Y. Gong, Marianne K. DeGorter, Ute I. Schwarz, Peter Yin, Yun‐Hee Choi, Rommel G. Tirona, Richard B. Kim

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldPharmacology, Toxicology and Pharmaceutics
TopicPharmacogenetics and Drug Metabolism
Canadian institutionsWestern University
Fundersnot available
KeywordsCYP3AIn vivoCYP3A4ChemistryMetaboliteCYP3A5PharmacokineticsGenotypingEndocrinologyCytochrome P450Internal medicinePharmacologyGenotypeMetabolismBiochemistryBiologyMedicineGeneGenetics

Abstract

fetched live from OpenAlex

There is marked interindividual variability in cytochrome P450 3A (CYP3A) activity. Plasma concentration of 4β‐hydroxycholesterol (4βOH‐C), an endogenous metabolite formed by CYP3A‐mediated hydroxylation of cholesterol, has been proposed as in vivo probe of CYP3A activity. Thus, we characterized the clinical and genetic variables associated with 4βOH‐C concentration in patients (n = 532). Subjects were consented to provide a brief medical history, plasma and DNA for genotyping. 4βOH‐C was measured by liquid‐chromatography tandem mass spectrometry. Predictors of molar ratio of 4βOH‐C to cholesterol (4βOH‐C/C) were assessed by multiple linear regression analysis. The mean 4βOH‐C concentration was 29.3 ng/mL (SD 20.6). 4βOH‐C/C did not appear to be significantly affected by concomitant administration of drugs with CYP3A inducing or inhibitory properties. Of the demographic variables assessed, 4βOH‐C/C was significantly related to body mass index (p < 0.001). Importantly, 4βOH‐C/C was associated with CYP3A4*22 (p < 0.01), CYP3A5*3 (p < 0.005), and POR*28 (cytochrome P450 oxidoreductase, p < 0.05) genotypes. Finally, 4βOH‐C/C concentrations were associated with concentrations of the CYP3A substrates atorvastatin and tamoxifen (p < 0.01). Our data demonstrate 4βOH‐C levels can be effectively used to quantify the in vivo relevance of CYP3A genetic variations and clinical variables.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.111
GPT teacher head0.447
Teacher spread0.336 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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