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The Microbial Metabolite Sensor Pregnane X Receptor (PXR) Restrains Fibroblasts from Promoting Gastrointestinal Inflammation and Fibrosis in Mice

2017· article· en· W3170541680 on OpenAlexaffabout
Kyle L. Flannigan, Laurie Alston, Sridhar Mani, Thomas K. H. Chang, Simon A. Hirota

Bibliographic record

VenueThe FASEB Journal · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicInflammatory Bowel Disease
Canadian institutionsUniversity of British ColumbiaUniversity of Calgary
FundersU.S. Department of Defense
KeywordsPregnane X receptorFibrosisMetaboliteInflammationBiologyPharmacologyInternal medicineEndocrinologyImmunologyNuclear receptorMedicineBiochemistry

Abstract

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INTRODUCTION Fibrosis contributes to intestinal strictures and obstruction in 30–50% of Crohn's disease patients. The pathogenesis of intestinal fibrosis is incompletely understood and has virtually no effective treatments. The pregnane X receptor (PXR), a xenobiotic receptor involved in detoxification responses, has recently been identified as a modulator of fibrosis in hepatic stellate cells. Of the number of foreign ligands for the PXR, the tryptophan metabolite indole‐3‐propionic acid (IPA) produced by the intestinal commensal Clostridium sporogenes can bind to the PXR to mediate signalling events that protect intestinal barrier function. The role of the PXR in intestinal fibrosis and if microbial metabolite sensing can affect intestinal fibrotic responses is unknown. AIMS To examine the role of the PXR and its ability to sense microbial metabolites in the modulation of intestinal fibrosis. METHODS Intestinal inflammation was induced using DSS (3.5%) for 5 days followed by healing for 25 days. Fibrosis was assessed using Masson‐trichrome and Serius Red staining of histological sections. Mouse primary fibroblasts were grown from wild type (WT) and PXR −/minus; mice. Fibroblasts were stimulated with cytomix (TNF‐α, IL‐1β, and IFN‐γ) for 24 hours after which cell supernatants were assessed for cytokine concentrations using Luminex. Fibroblasts were also stimulated with cytomix in the presence of the PXR agonists pregnenolone 16α‐carbonitrile (PCN) or IPA and assessed for gene expression using qPCR. NFκB activity was assessed via Western blot for the p65 subunit. To examine the microbiota's role in fibrosis, the microbiota was depleted after the 5‐day course of DSS for 25 days using an antibiotic cocktail of vancomycin, neomycin, metronidazole and ampicillin. FINDINGS Following a 25‐day recovery after DSS, WT mice showed clear evidence of fibrosis as indicated by Masson‐trichrome and Serius Red staining. When compared to WT mice, PXR −/− mice demonstrated significantly greater levels of fibrosis. Mouse primary fibroblasts were found to express the PXR, and PXR −/− fibroblasts displayed morphological differences compared to WT fibroblasts. Following stimulation with cytomix, PXR −/− fibroblasts produced dramatically higher levels of proinflammatory cytokines including eotaxin, CXCL2, GM‐CSF, G‐CSF and IL‐9. Importantly, PCN and the microbial metabolite IPA were able to block the expression of these cytokines. These effects in PXR − / − fibroblasts may be linked to the increased activity of NFκB that was observed both basally and after stimulation with cytomix compared to WT fibroblasts. Depletion of the microbiota led to exacerbated intestinal fibrosis. CONCLUSIONS PXR signaling in intestinal fibroblasts appears to be required to restrain inflammation and fibrosis. Luminal sensing of bacterial derived indoles (ie. IPA) via PXR may be involved in this process, highlighting a xenobiotic receptor‐microbiota axis that could be targeted to prevent the intestinal fibrosis observed in Crohn's disease. Support or Funding Information Crohn's & Colitis Canada, Dr. Keith Sharkey's CCFC Chair in IBD Research, The Dr. Lloyd Sutherland Investigator in IBD/GI Research, Canadian Foundation for Innovation, Canada Research Chairs Program, US Department of Defense, Beverley Philips Rising Star Fellowship.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.000
Science and technology studies0.0000.001
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0050.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.228
Teacher spread0.220 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2017
Admission routes2
Has abstractyes

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