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Development of an effective in vitro epithelial cell infection model to study Edwardsiella tarda infections

2013· article· en· W3171104271 on OpenAlexaff
Byron Joel Tenkink, Bupe A. Siame, Ka Yin Leung, Julian A. Guttman

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldImmunology and Microbiology
TopicAquaculture disease management and microbiota
Canadian institutionsTrinity Western UniversityWestern UniversitySimon Fraser University
Fundersnot available
KeywordsEdwardsiella tardaBiologyPathogenesisPathogenMicrobiologyIn vivoMultiplicity of infectionIn vitroImmunologySecretionVirologyVirusFish <Actinopterygii>

Abstract

fetched live from OpenAlex

Edwardsiella tarda is an enteric pathogen that infects both warm‐water fish and humans. While it is known that E. tarda utilizes syringe‐like secretion systems to deliver bacterially‐derived pathogenic proteins into macrophages during infection, little is known about E. tarda pathogenesis in epithelial cells. To enable the investigation of E. tarda infection mechanisms, we hypothesized that an effective and reliable E. tarda infection model could be developed by utilizing epithelial cells that originate from organs that are targeted during in vivo infections. To develop this in vitro model, isolates of E. tarda from various locations around the world were used to infect 4 different epithelial cell lines derived from fish, using various bacterial loads and durations of the infections. We found that E. tarda infected 10–15% of BF‐2 (Bluegill fry caudal trunk cells) when used at a multiplicity of infection of 10 for three hours at 30°C. The E. tarda infection rate was measured by counting infected cells per slide after fixation and visualization by fluorescence microscopy. Our results constitute the most effective E. tarda infection model ever developed and provides us the foundation to elucidate the strategies E. tarda utilize to cause disease. Grant Funding Source : Natural Sciences and Engineering Research Council

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.238
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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