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The role of Hsp90‐R2TP complex in snoRNP assembly and ribosomal RNA processing

2012· article· en· W3173422619 on OpenAlexaff
Walid A. Houry

Bibliographic record

VenueThe FASEB Journal · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA modifications and cancer
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsSmall nucleolar RNABiogenesisNucleoplasmBiologyChaperone (clinical)Cell biologyRibosomal RNARNAGeneticsNucleolusLong non-coding RNAMedicineGene

Abstract

fetched live from OpenAlex

Box C/D snoRNPs, which typically consist of a snoRNA and four protein components (Nop1, Nop56, Nop58 and Snu13), play an essential role in the modification and processing of pre‐rRNA. Earlier, we had demonstrated that the Hsp90‐R2TP (Rvb1‐Rvb2‐Tah1‐Pih1) complex is involved in box C/D snoRNP biogenesis and assembly and, consequently, influences pre‐rRNA processing. Rvb1 and Rvb2 are AAA+ helicases, while Tah1 and Pih1 are Hsp90 cofactors/interactors. We had shown that the stability of the R2TP complex is modulated by Hsp90. More recently, we found, unexpectedly, that the activity of the R2TP complex is controlled by the dynamic subcellular redistribution of its protein components in response to growth conditions and nutrient limitation. In vigorously growing cells, the R2TP complex localizes in the nucleoplasm and interacts tightly with box C/D snoRNPs through Pih1, whereas, this interaction is significantly reduced in poorly growing cells. The R2TP complex is found to affect snoRNP levels by stabilizing Nop58. Our data suggest the presence of an unconventional communication pathway in which the Hsp90 chaperone stabilizes and promotes the assembly of the R2TP complex which in turn stabilizes and promotes the assembly of the box C/D snoRNP complexes. Our progress in this regard will be described in addition to our ongoing efforts aimed at the structural characterization of the R2TP complex.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.266
Teacher spread0.249 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2012
Admission routes1
Has abstractyes

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