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The Effect of the Lipid Environment on Drug Binding and Transport by the P‐Glycoprotein Multidrug Transporter

2012· article· en· W3173897950 on OpenAlexafffundabout
Frances J. Sharom, Adam Clay

Bibliographic record

VenueThe FASEB Journal · 2012
Typearticle
Languageen
FieldMedicine
TopicDrug Transport and Resistance Mechanisms
Canadian institutionsUniversity of Guelph
FundersCanadian Cancer Society
KeywordsChemistryLipid bilayerATP-binding cassette transporterP-glycoproteinTransporterMultiple drug resistanceMembraneLipophilicityPartition coefficientBiochemistryATP hydrolysisBiophysicsEnzymeChromatographyBiologyATPase

Abstract

fetched live from OpenAlex

The P‐glycoprotein multidrug transporter (Pgp, ABCB1) is an ABC protein that effluxes hundreds of structurally unrelated compounds from cells, and is implicated in multidrug resistance in many human cancers. The membrane environment is critically important for Pgp function since lipophilic substrates partition into, and are pumped out of, the membrane. Using purified Pgp reconstituted into proteoliposomes of defined lipids, the effect of the bilayer melting transition on the lipid partition coefficient, binding affinity, and initial rate of transport was measured for Hoechst 33342, LDS‐751 and MK‐571. All drugs partitioned best into liquid crystalline lipid, and bound to Pgp with millimolar affinities within the membrane, suggesting that they interact with the protein weakly. Pgp drug binding affinity was modulated by both the lipid phase state and acyl chain length, and was higher for all drugs in the rigid gel phase. The k cat values for Pgp‐mediated drug transport were also sensitive to lipid melting, however, they were higher in the liquid crystalline phase. Transition state analysis showed the existence of entropy‐enthalpy compensation and an isokinetic relationship between ΔH ‡ and ΔS ‡ . The transport rate is proposed to be controlled by the drug binding affinity and a large conformational change, rather than the rate of ATP hydrolysis. This research is funded by the Canadian Cancer Society (grant #700248).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.204
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2012
Admission routes3
Has abstractyes

Explore more

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