MétaCan
Menu
Back to cohort

Cloning and functional characterization of <i>CsγTRPS</i> from <i>Coriandrum sativum</i>

2013· article· en· W3174972902 on OpenAlexafffund
Mariana Galata, Soheil S. Mahmoud

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant biochemistry and biosynthesis
Canadian institutionsUniversity of British Columbia, Okanagan CampusOkanagan University CollegeUniversity of British Columbia
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsCoriandrumSativumTerpeneMonoterpeneEssential oilChemistryBotanyBiochemistryBiologyFood science

Abstract

fetched live from OpenAlex

Plant terpenes are a large and diverse class of naturally‐derived compounds, highly valued in the medicinal, perfume and culinary industries, to name a few. The seeds of Coriandrum sativum (coriander) produce essential oil rich in monoterpenes, volatile C 10 terpenes. After Illumina transcriptome sequencing, several terpene synthase (TPS) candidate gene homologs were identified. In this study, one of these candidates, CsγTRPS , was cloned and functionally characterized in an effort to find TPS genes that describe C. sativum seed essential oil. CsγTRPS , which encodes a ca. 60 kDa protein, was expressed in bacteria and the recombinant protein purified by Ni‐NTA agarose affinity chromatography. Enzymatic assays with geranyl diphosphate (GPP), the linear precursor to monoterpenes, revealed that this protein catalyzes the conversion of GPP to an important monoterpene constituent of coriander essential oil, and a few minor monoterpene products. These experiments facilitate future studies concerning essential oil production, and other processes, in C. sativum . They also enable efforts to improve the essential oil of coriander through metabolic engineering or plant breeding. This project was supported by NSERC funding to Dr. Soheil Mahmoud.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.177
Teacher spread0.170 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes2
Has abstractyes

Explore more

Same venueThe FASEB JournalSame topicPlant biochemistry and biosynthesisFrench-language works237,207