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Record W3176054038 · doi:10.1038/s41467-021-24282-7

Crystal structure of an archaeal CorB magnesium transporter

2021· article· en· W3176054038 on OpenAlexafffund
Yu Seby Chen, Guennadi Kozlov, Brandon E. Moeller, Ahmed Rohaim, Rayan Fakih, Benoı̂t Roux, John E. Burke, Kalle Gehring

Bibliographic record

VenueNature Communications · 2021
Typearticle
Languageen
FieldNursing
TopicMagnesium in Health and Disease
Canadian institutionsUniversity of VictoriaUniversity of British ColumbiaMcGill University
FundersNational Institute of General Medical SciencesCanadian Institutes of Health ResearchNatural Sciences and Engineering Research Council of CanadaGovernment of CanadaUniversity of SaskatchewanCanadian Light Source
KeywordsTransport proteinTransmembrane domainChemistryProtein domainMembrane transport proteinProtein structureCrystallographyTransporterBiophysicsStructural biologyMembrane proteinBiochemistryBiologyMembraneGene

Abstract

fetched live from OpenAlex

Abstract CNNM/CorB proteins are a broadly conserved family of integral membrane proteins with close to 90,000 protein sequences known. They are associated with Mg 2+ transport but it is not known if they mediate transport themselves or regulate other transporters. Here, we determine the crystal structure of an archaeal CorB protein in two conformations (apo and Mg 2+ -ATP bound). The transmembrane DUF21 domain exists in an inward-facing conformation with a Mg 2+ ion coordinated by a conserved π-helix. In the absence of Mg 2+ -ATP, the CBS-pair domain adopts an elongated dimeric configuration with previously unobserved domain-domain contacts. Hydrogen-deuterium exchange mass spectrometry, analytical ultracentrifugation, and molecular dynamics experiments support a role of the structural rearrangements in mediating Mg 2+ -ATP sensing. Lastly, we use an in vitro, liposome-based assay to demonstrate direct Mg 2+ transport by CorB proteins. These structural and functional insights provide a framework for understanding function of CNNMs in Mg 2+ transport and associated diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.645
Threshold uncertainty score0.517

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.321
Teacher spread0.303 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations38
Published2021
Admission routes2
Has abstractyes

Explore more

Same venueNature CommunicationsSame topicMagnesium in Health and DiseaseFrench-language works237,207