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Record W3176432538 · doi:10.1609/aaai.v35i1.16087

Towered Actor Critic For Handling Multiple Action Types In Reinforcement Learning For Drug Discovery

2021· article· en· W3176432538 on OpenAlexafffund
Sai Krishna Gottipati, Yashaswi Pathak, Boris Sattarov, Sahir, Rohan Nuttall, Mohammad Amini, Matthew E. Taylor, Sarath Chandar

Bibliographic record

VenueProceedings of the AAAI Conference on Artificial Intelligence · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicReceptor Mechanisms and Signaling
Canadian institutionsPolytechnique MontréalMila - Quebec Artificial Intelligence InstituteCanadian Institute for Advanced ResearchUniversity of Alberta
FundersUniversity of AlbertaFedDev OntarioAlberta Machine Intelligence InstituteNatural Sciences and Engineering Research Council of CanadaCanadian Institute for Advanced Research
KeywordsReinforcement learningComputer sciencePipeline (software)Action (physics)Artificial intelligenceDrug discoverySpace (punctuation)Machine learningProgramming languageBioinformatics

Abstract

fetched live from OpenAlex

Reinforcement learning (RL) has made significant progress in both abstract and real-world domains, but the majority of state-of-the-art algorithms deal only with monotonic actions. However, some applications require agents to reason over different types of actions. Our application simulates reaction-based molecule generation, used as part of the drug discovery pipeline, and includes both uni-molecular and bi-molecular reactions. This paper introduces a novel framework, towered actor critic (TAC), to handle multiple action types. The TAC framework is general in that it is designed to be combined with any existing RL algorithms for continuous action space. We combine it with TD3 to empirically obtain significantly better results than existing methods in the drug discovery setting. TAC is also applied to RL benchmarks in OpenAI Gym and results show that our framework can improve, or at least does not hurt, performance relative to standard TD3.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.010
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.006
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0020.001
Research integrity0.0010.003
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.069
GPT teacher head0.314
Teacher spread0.245 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2021
Admission routes2
Has abstractyes

Explore more

Same venueProceedings of the AAAI Conference on Artificial IntelligenceSame topicReceptor Mechanisms and SignalingFrench-language works237,207