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Record W3176705600 · doi:10.21428/594757db.fb59ce6c

Using ProtoPNet for Interpretable Alzheimer’s Disease Classification

2021· article· en· W3176705600 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldComputer Science
TopicMachine Learning in Healthcare
Canadian institutionsToronto Metropolitan University
FundersNational Institute of Biomedical Imaging and BioengineeringCanadian Institutes of Health ResearchNational Institutes of HealthGenentechIXICOH. Lundbeck A/SServierEisaiNorthern California Institute for Research and EducationBioClinicaF. Hoffmann-La RocheUniversity of Southern CaliforniaBiogenU.S. Department of DefenseMeso Scale DiagnosticsAlzheimer's Disease Neuroimaging InitiativeNovartis Pharmaceuticals CorporationPfizerEli Lilly and CompanyBristol-Myers SquibbNational Institute on AgingAlzheimer's AssociationFoundation for the National Institutes of Health
KeywordsInterpretabilityComputer scienceArtificial intelligenceMachine learningTransparency (behavior)ArchitectureDeep learningProcess (computing)Black boxPredictive modellingClinical PracticeMedicineGeography

Abstract

fetched live from OpenAlex

Early detection of Alzheimer’s disease (AD) is significant for identifying of better treatment plans for the patients as the AD is not curable. On the other hand, lack of interpretability for the high performing prediction models might prevent incorporation of such models in clinical usage for AD detection. Accordingly, it is important to develop highly interpretable models which can create trust towards the prediction models by showing the factors that contribute to the models’ decisions. In this paper, we use ProtoPNet architecture in combination with popular pretrained deep learning models to add interpretability to the AD classifications over MRI scans from ADNI and OASIS datasets. We find that the ProtoPNet model with DenseNet121 architecture can reach 90 percent accuracy while providing explanatory illustrations of the model’s reasonings for the generated predictions. We also note that, in most cases, the performances of the ProtoPNet models are slightly inferior to their black-box counterparts, however, their ability to provide reasoning and transparency in the prediction generation process can contribute to higher adoption of the prediction models in clinical practice.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.976
Threshold uncertainty score0.289

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.179
GPT teacher head0.405
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Quick stats

Citations21
Published2021
Admission routes2
Has abstractyes

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