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Record W3178540907 · doi:10.1101/2021.07.12.21259660

An Open Repository of Real-Time COVID-19 Indicators

2021· preprint· en· W3178540907 on OpenAlexaff
Alex Reinhart, Logan Brooks, Maria Jahja, Aaron Rumack, Jingjing Tang, Sumit Agrawal, Wael Al Saeed, Taylor Arnold, Amartya Basu, Jacob Bien, Ángel Alexander Cabrera, Andrew I. Chin, Eu Jing Chua, Brian Clark, Sarah Colquhoun, Nat DeFries, David Farrow, Jodi Forlizzi, Jed Grabman, Samuel Gratzl, Alden Green, George Haff, Robin Han, Kate Harwood, Addison J. Hu, Raphael Hyde, Sangwon Hyun, Ananya Joshi, Jimi Kim, Andrew Kuznetsov, Wichada La Motte‐Kerr, Yeonjin Lee, Kenneth Lee, Zachary C. Lipton, Michael X. Liu, Lester Mackey, Kathryn Mazaitis, Daniel J. McDonald, Phillip McGuinness, Balasubramanian Narasimhan, Michael P. O’Brien, Natalia L. Oliveira, Pratik Patil, Adam Perer, Collin A. Politsch, Samyak Rajanala, Dawn Rucker, Chris Scott, Nigam H. Shah, Vishnu Shankar, James Sharpnack, Dmitry Shemetov, Noah Simon, Benjamin Y. Smith, Vishakha Srivastava, Shuyi Tan, Robert Tibshirani, Elena Tuzhilina, Ana Karina Van Nortwick, Valérie Ventura, Larry Wasserman, Benjamin Alan Weaver, Jeremy C. Weiss, Spencer Whitman, Kristin Williams, Roni Rosenfeld, Ryan J. Tibshirani

Bibliographic record

VenuemedRxiv · 2021
Typepreprint
Languageen
FieldMedicine
TopicData-Driven Disease Surveillance
Canadian institutionsUniversity of British Columbia
FundersCenters for Disease Control and Prevention
KeywordsPython (programming language)Computer sciencePhoneCoronavirus disease 2019 (COVID-19)Open dataPandemicPublic healthData scienceSoftwarePublic health surveillanceThe InternetTracking (education)World Wide WebInfectious disease (medical specialty)Medicine

Abstract

fetched live from OpenAlex

Abstract The COVID-19 pandemic presented enormous data challenges in the United States. Policy makers, epidemiological modelers, and health researchers all require up-to-date data on the pandemic and relevant public behavior, ideally at fine spatial and temporal resolution. The COVIDcast API is our attempt to fill this need: operational since April 2020, it provides open access to both traditional public health surveillance signals (cases, deaths, and hospitalizations) and many auxiliary indicators of COVID-19 activity, such as signals extracted from de-identified medical claims data, massive online surveys, cell phone mobility data, and internet search trends. These are available at a fine geographic resolution (mostly at the county level) and are updated daily. The COVIDcast API also tracks all revisions to historical data, allowing modelers to account for the frequent revisions and backfill that are common for many public health data sources. All of the data is available in a common format through the API and accompanying R and Python software packages. This paper describes the data sources and signals, and provides examples demonstrating that the auxiliary signals in the COVIDcast API present information relevant to tracking COVID activity, augmenting traditional public health reporting and empowering research and decision-making.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.035
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.002
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.340
Teacher spread0.314 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2021
Admission routes1
Has abstractyes

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