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Record W3187573084 · doi:10.1002/eji.202149209

Granzyme A and CD160 expression delineates ILC1 with graded functions in the mouse liver

2021· article· en· W3187573084 on OpenAlexafffund
Chiara Di Censo, Marie Marotel, Irene Mattiola, Lena Müller, Gianluca Scarno, Giuseppe Pietropaolo, Giovanna Peruzzi, Mattia Laffranchi, Julija Mazej, Mohamed S. Hasim, Sara Asif, Eleonora Russo, Luana Tomaipitinca, Helena Stabile, Seung‐Hwan Lee, Laura Vian, Massimo Gadina, Angela Gismondi, Han‐Yu Shih, Yohei Mikami, Cristina Capuano, Giovanni Bernardini, Michael Bonelli, Silvano Sozzani, Andreas Diefenbach, Michele Ardolino, Angela Santoni, Giuseppe Sciumè

Bibliographic record

VenueEuropean Journal of Immunology · 2021
Typearticle
Languageen
FieldImmunology and Microbiology
TopicIL-33, ST2, and ILC Pathways
Canadian institutionsOttawa HospitalInstitute of Infection and ImmunityUniversity of OttawaOntario Institute for Cancer Research
FundersH2020 Marie Skłodowska-Curie ActionsDeutsche ForschungsgemeinschaftHorizon 2020 Framework ProgrammeAustrian Science FundAssociazione Italiana per la Ricerca sul CancroCanadian Institutes of Health Research
KeywordsBiologyGranzyme AInnate lymphoid cellCell biologyGranzyme BImmunologyImmune systemT cellImmunity

Abstract

fetched live from OpenAlex

Abstract Type 1 innate lymphoid cells (ILC1) are tissue‐resident lymphocytes that provide early protection against bacterial and viral infections. Discrete transcriptional states of ILC1 have been identified in homeostatic and pathological contexts. However, whether these states delineate ILC1 with different functional properties is not completely understood. Here, we show that liver ILC1 are heterogeneous for the expression of distinct effector molecules and surface receptors, including granzyme A (GzmA) and CD160, in mice. ILC1 expressing high levels of GzmA are enriched in the liver of adult mice, and represent the main hepatic ILC1 population at birth. However, the heterogeneity of GzmA and CD160 expression in hepatic ILC1 begins perinatally and increases with age. GzmA + ILC1 differ from NK cells for the limited homeostatic requirements of JAK/STAT signals and the transcription factor Nfil3 . Moreover, by employing Rorc(γt) ‐fate map (fm) reporter mice, we established that ILC3‐ILC1 plasticity contributes to delineate the heterogeneity of liver ILC1, with RORγt‐fm + cells skewed toward a GzmA – CD160 + phenotype. Finally, we showed that ILC1 defined by the expression of GzmA and CD160 are characterized by graded cytotoxic potential and ability to produce IFN‐γ. In conclusion, our findings help deconvoluting ILC1 heterogeneity and provide evidence for functional diversification of liver ILC1.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.622
Threshold uncertainty score0.396

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.191
Teacher spread0.176 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations44
Published2021
Admission routes2
Has abstractyes

Explore more

Same venueEuropean Journal of ImmunologySame topicIL-33, ST2, and ILC PathwaysFrench-language works237,207