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Record W3194287982 · doi:10.1139/cjb-2021-0058

Hide and seek: molecular barcoding clarifies the distribution of two cryptic duckweed species across Alberta

2021· article· en· W3194287982 on OpenAlexaffvenueabout
Kanishka M. Senevirathna, Varina E. Crisfield, Theresa M. Burg, Robert A. Laird

Bibliographic record

VenueBotany · 2021
Typearticle
Languageen
FieldEnvironmental Science
TopicConstructed Wetlands for Wastewater Treatment
Canadian institutionsRoyal Alberta MuseumAlberta Biodiversity Monitoring InstituteUniversité de SherbrookeUniversity of AlbertaUniversity of Lethbridge
Fundersnot available
KeywordsBiologySpecies complexLemnaDNA barcodingLemna minorEcologyBiodiversityFlora (microbiology)Identification (biology)BotanyInvasive speciesAquatic plantPhylogenetic treeGeneGenetics

Abstract

fetched live from OpenAlex

Regional and global biodiversity may be underestimated due to the presence of cryptic species: species that are morphologically similar, but genetically distinct. Here, we focus on two cryptic duckweed species, Lemna minor L. and Lemna turionifera Landolt, which have overlapping geographic ranges and are easily mistaken for one another. We developed species-specific primers based on DNA barcoding sequences to facilitate the rapid identification of these two monomorphic duckweeds, allowing us to investigate their presence and distribution in Alberta, Canada. While current reports indicate the presence of L. turionifera (and the morphologically distinct Lemna trisulca L.) in Alberta, our data indicate that L. minor is also present, predominantly in the southern part of the province. Thus, this paper (i) contributes to the accuracy and completeness of a regional flora, and (ii) provides useful and flexible tools for the rapid molecular identification of cryptic Lemna species, which are of wide interest in diverse fields such as biotechnology, toxicology, bioremediation, and ecology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.684
Threshold uncertainty score0.629

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.226
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2021
Admission routes3
Has abstractyes

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