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Record W3194401934 · doi:10.1093/protein/gzab021

Engineering stable carbonic anhydrases for CO2 capture: a critical review

2021· review· en· W3194401934 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueProtein Engineering Design and Selection · 2021
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEnzyme function and inhibition
Canadian institutionsUniversity of Waterloo
Fundersnot available
KeywordsComputational biologyPhage displayProtein engineeringDrug discoveryStructural similaritySimilarity (geometry)Computer scienceProtein designChemistryProtein structureBiologyCombinatorial chemistryBiochemistryArtificial intelligenceEnzyme

Abstract

fetched live from OpenAlex

Abstract In the search for green CO2-capture technology to combat global warming, bioengineering of carbonic anhydrases (CAs) is being sought for with target adaptabilities of extreme temperatures and alkaline pH conditions. The modern in silico screening of protein engineering complements the conventional in vitro high-throughput via generation of iteratively cumulating e-library of diverse beneficial mutations. As identified through various studies of randomized and rationalized mutagenesis, different features have been explored to engineer stability in CAs, including improving structural contacts in the protein quaternary architecture with disulfide bonds and salt-bridge networks, as well as enhancing the protein surface electrostatics. Advanced molecular dynamic simulation techniques and progressive training of machine learning-assisted databases are now being used to unravel wild-type CA properties and predict stable variants thereof with greater accuracy than ever before. The best fit CA achieved so forth demonstrates tolerances of up to 107°C at pH >10 with 25-fold enhancement in CO2 mass transfer. This review will provide an overview of different approaches that have been utilized for engineering CAs and will highlight potential challenges and strategies for developing CA-based CO2-capture and sequestration.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.924
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.273
Teacher spread0.245 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it