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Record W3194732439 · doi:10.1038/s41467-021-24558-y

Placental DNA methylation signatures of maternal smoking during pregnancy and potential impacts on fetal growth

2021· review· en· W3194732439 on OpenAlexafffund
Todd M. Everson, Marta Vives-Usano, Emie Seyve, Andrés Cárdenas, Marina Lacasaña, Jeffrey M. Craig, Corina Lesseur, Emily Baker, Nora Fernández‐Jiménez, Barbara Heude, Patrice Perron, Beatriz González-Alzaga, Jane Halliday, Maya A. Deyssenroth, Margaret R. Karagas, Carmen Íñiguez, Luigi Bouchard, Pedro Carmona‐Sáez, Yuk Jing Loke, Ke Hao, Thalía Belmonte, Marie‐Aline Charles, Jordi Martorell‐Marugán, Evelyne Muggli, Jia Chen, Mariana F. Fernández, Jörg Tost, Antonio Gómez‐Martín, Stephanie J. London, Jordi Sunyer, Carmen J. Marsit, Johanna Lepeule, Marie‐France Hivert, Mariona Bustamante

Bibliographic record

VenueNature Communications · 2021
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEpigenetics and DNA Methylation
Canadian institutionsUniversité de Sherbrooke
FundersNHLBI Division of Intramural ResearchNational Institute of General Medical SciencesNational Institute of Mental HealthAudrey and Theodor Geisel School of Medicine at DartmouthNational Institute of Environmental Health SciencesUniversidad de OviedoUniversité de ParisInstitut National de la Santé et de la Recherche MédicaleInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'EnvironnementFundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat ValencianaCanadian Institutes of Health ResearchCentro Pfizer-Universidad de Granada-Junta de Andalucía de Genómica e Investigación OncológicUniversitat Jaume IDartmouth CollegeCentre National de la Recherche ScientifiqueUniversitat de ValènciaNational Institutes of HealthEuskal Herriko UnibertsitateaEusko JaurlaritzaDeakin UniversityUniversidad de GranadaCentre d'Imagerie BioMédicaleMurdoch Children's Research InstituteChildren’s Hospital of Wisconsin Research InstituteUniversité de SherbrookeEmory UniversityPfizerUniversitat Pompeu FabraMassachusetts General HospitalU.S. Department of Health and Human Services
KeywordsdNaMDNA methylationEpigeneticsPregnancyPlacentaFetusEpigenomeBiologyBioinformaticsMedicinePhysiologyGeneGeneticsGene expression

Abstract

fetched live from OpenAlex

Maternal smoking during pregnancy (MSDP) contributes to poor birth outcomes, in part through disrupted placental functions, which may be reflected in the placental epigenome. Here we present a meta-analysis of the associations between MSDP and placental DNA methylation (DNAm) and between DNAm and birth outcomes within the Pregnancy And Childhood Epigenetics (PACE) consortium (N = 1700, 344 with MSDP). We identify 443 CpGs that are associated with MSDP, of which 142 associated with birth outcomes, 40 associated with gene expression, and 13 CpGs are associated with all three. Only two CpGs have consistent associations from a prior meta-analysis of cord blood DNAm, demonstrating substantial tissue-specific responses to MSDP. The placental MSDP-associated CpGs are enriched for environmental response genes, growth-factor signaling, and inflammation, which play important roles in placental function. We demonstrate links between placental DNAm, MSDP and poor birth outcomes, which may better inform the mechanisms through which MSDP impacts placental function and fetal growth.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.843
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.323
Teacher spread0.303 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designOther design
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations82
Published2021
Admission routes2
Has abstractyes

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